miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23643 3' -54.6 NC_005261.1 + 66471 0.66 0.936777
Target:  5'- cCAGGCgCGCGUCCucGCGguACAgcGAGAgCGg -3'
miRNA:   3'- -GUCUGaGCGCAGG--CGC--UGU--UUCUgGC- -5'
23643 3' -54.6 NC_005261.1 + 67076 0.67 0.896024
Target:  5'- gGGGCUCGCucgggcgGUCCauggcGCGACGcGGugCGg -3'
miRNA:   3'- gUCUGAGCG-------CAGG-----CGCUGUuUCugGC- -5'
23643 3' -54.6 NC_005261.1 + 67353 0.66 0.944734
Target:  5'- cCGGGCcCGCGaaggCCGcCGGCAgcgccaccgccgcgAAGACCGc -3'
miRNA:   3'- -GUCUGaGCGCa---GGC-GCUGU--------------UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 67600 0.69 0.837108
Target:  5'- gGGAUUCagcccgaagGCGgacgCCGCGcCAAAGACCa -3'
miRNA:   3'- gUCUGAG---------CGCa---GGCGCuGUUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 68113 0.68 0.889322
Target:  5'- uCGGGCUggagcugCGCGggCCGCGGCGcggcGACCGc -3'
miRNA:   3'- -GUCUGA-------GCGCa-GGCGCUGUuu--CUGGC- -5'
23643 3' -54.6 NC_005261.1 + 69443 0.66 0.936777
Target:  5'- aCGGGCagCGCGgacgagCUGCGGCGcgucgAGGGCCa -3'
miRNA:   3'- -GUCUGa-GCGCa-----GGCGCUGU-----UUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 70118 0.66 0.936777
Target:  5'- -cGcCUCGUG-CC-CGGCAAAGGCCa -3'
miRNA:   3'- guCuGAGCGCaGGcGCUGUUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 70331 0.7 0.765595
Target:  5'- gUAGGCgcaCGCGUCgaGCGGgcCGGGGACCGg -3'
miRNA:   3'- -GUCUGa--GCGCAGg-CGCU--GUUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 71825 0.66 0.936777
Target:  5'- gAGACggGCcacaCCGCGGCGAAGuCCGc -3'
miRNA:   3'- gUCUGagCGca--GGCGCUGUUUCuGGC- -5'
23643 3' -54.6 NC_005261.1 + 72534 0.67 0.921036
Target:  5'- -cGGCUCGC-UgCGCGGCAGGGGaCGg -3'
miRNA:   3'- guCUGAGCGcAgGCGCUGUUUCUgGC- -5'
23643 3' -54.6 NC_005261.1 + 72961 0.69 0.837108
Target:  5'- -cGGCUCGCGcccgCCGCcGCGGGGGuCCGc -3'
miRNA:   3'- guCUGAGCGCa---GGCGcUGUUUCU-GGC- -5'
23643 3' -54.6 NC_005261.1 + 73113 0.71 0.726674
Target:  5'- cCAGAaagccCGCGUCCGCG-CGGuccccGGGCCGg -3'
miRNA:   3'- -GUCUga---GCGCAGGCGCuGUU-----UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 73145 0.66 0.941541
Target:  5'- nGGGCUCGCGccgCCagGCGGCGuuguugcucGGCCGg -3'
miRNA:   3'- gUCUGAGCGCa--GG--CGCUGUuu-------CUGGC- -5'
23643 3' -54.6 NC_005261.1 + 73446 0.67 0.903127
Target:  5'- cCAGGCcggcCGCGUCCGCGuccGCGcgcccccccuGGGCCGc -3'
miRNA:   3'- -GUCUGa---GCGCAGGCGC---UGUu---------UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 73493 0.66 0.941541
Target:  5'- -cGGCgCGCGgaCGCGGCGAGGAUCc -3'
miRNA:   3'- guCUGaGCGCagGCGCUGUUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 74270 0.7 0.784373
Target:  5'- --cGCgcgCGCGUCCGCGGCGGgcGGGgCGg -3'
miRNA:   3'- gucUGa--GCGCAGGCGCUGUU--UCUgGC- -5'
23643 3' -54.6 NC_005261.1 + 77879 0.69 0.833784
Target:  5'- cCAGGCUCGCGUCCGcCGucuccucgcugcaGCAggAggugagccagcugcGGGCCGg -3'
miRNA:   3'- -GUCUGAGCGCAGGC-GC-------------UGU--U--------------UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 81733 0.73 0.624877
Target:  5'- -cGGCaCGCGUCCGCaGugGAAGACgGa -3'
miRNA:   3'- guCUGaGCGCAGGCG-CugUUUCUGgC- -5'
23643 3' -54.6 NC_005261.1 + 83247 0.66 0.946067
Target:  5'- aCGGACUCGCccugGUUCGCGgugacGCAGAGcuCCu -3'
miRNA:   3'- -GUCUGAGCG----CAGGCGC-----UGUUUCu-GGc -5'
23643 3' -54.6 NC_005261.1 + 84966 0.71 0.706681
Target:  5'- gAGGCgucgggCGCGUCCGCGAUgc--GCCGg -3'
miRNA:   3'- gUCUGa-----GCGCAGGCGCUGuuucUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.