miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23643 3' -54.6 NC_005261.1 + 136915 0.67 0.92706
Target:  5'- uGGGCcgCGCGgCCGCGGCGcauguggugguacauGGGCCGc -3'
miRNA:   3'- gUCUGa-GCGCaGGCGCUGUu--------------UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 135085 0.71 0.756021
Target:  5'- gCGGGCUCGCGgccCgGCGGCGGagcgcgaggcGGACCc -3'
miRNA:   3'- -GUCUGAGCGCa--GgCGCUGUU----------UCUGGc -5'
23643 3' -54.6 NC_005261.1 + 135016 0.74 0.573646
Target:  5'- gCGGGCccgcaCGCGgCCGCGGCGgcGAGGCCGa -3'
miRNA:   3'- -GUCUGa----GCGCaGGCGCUGU--UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 134738 0.66 0.936287
Target:  5'- cCGGACUcggcgacggcaccCGCGacCCGCGGCGGcauggcGGACCa -3'
miRNA:   3'- -GUCUGA-------------GCGCa-GGCGCUGUU------UCUGGc -5'
23643 3' -54.6 NC_005261.1 + 132498 0.68 0.883095
Target:  5'- gGGACgCGCccgaCCGCGACGcGGGCUGg -3'
miRNA:   3'- gUCUGaGCGca--GGCGCUGUuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 131989 0.67 0.915306
Target:  5'- cCAGGCcuucgcagUCGCGgaCgGCGACAAcuGGGCCGc -3'
miRNA:   3'- -GUCUG--------AGCGCa-GgCGCUGUU--UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 131625 0.69 0.820198
Target:  5'- -cGcCUgGCGcCCGCcGCGAGGACCGa -3'
miRNA:   3'- guCuGAgCGCaGGCGcUGUUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 130474 0.75 0.502861
Target:  5'- -cGGCUCGCGgcgugccUCgGCGGCGAGGGCCc -3'
miRNA:   3'- guCUGAGCGC-------AGgCGCUGUUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 129690 0.71 0.736551
Target:  5'- -cGACUCGgG-CCGgGGCcGGGGCCGg -3'
miRNA:   3'- guCUGAGCgCaGGCgCUGuUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 128815 0.69 0.81148
Target:  5'- gGGGCUCGCG-CUGCGGCu--GACg- -3'
miRNA:   3'- gUCUGAGCGCaGGCGCUGuuuCUGgc -5'
23643 3' -54.6 NC_005261.1 + 127829 0.67 0.926525
Target:  5'- --cGCUCGCGgCCGCGAgCAGcGGACgGg -3'
miRNA:   3'- gucUGAGCGCaGGCGCU-GUU-UCUGgC- -5'
23643 3' -54.6 NC_005261.1 + 127798 0.68 0.868609
Target:  5'- gCGGGC-CgGCG-CCGCGGCGGcGGGCCGc -3'
miRNA:   3'- -GUCUGaG-CGCaGGCGCUGUU-UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 126415 0.66 0.940137
Target:  5'- gAGACUuCGCGcgCCGuCGccacguacauaugcGCAAAGGCCa -3'
miRNA:   3'- gUCUGA-GCGCa-GGC-GC--------------UGUUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 125966 0.71 0.726674
Target:  5'- gCAGcACuUCGC-UCgGCGACGGGGGCCGc -3'
miRNA:   3'- -GUC-UG-AGCGcAGgCGCUGUUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 125723 0.67 0.909336
Target:  5'- gCGGGCUCGgcUGgggCCGCcGCAAggGGGCCGg -3'
miRNA:   3'- -GUCUGAGC--GCa--GGCGcUGUU--UCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 123246 0.66 0.940137
Target:  5'- cCAGGCgcgggccccgcccaUCGC--CCGUGACGAGGugCGg -3'
miRNA:   3'- -GUCUG--------------AGCGcaGGCGCUGUUUCugGC- -5'
23643 3' -54.6 NC_005261.1 + 121820 0.71 0.726674
Target:  5'- uGGGCUCuGCGggccgCCGCGGCGgcGcACCGg -3'
miRNA:   3'- gUCUGAG-CGCa----GGCGCUGUuuC-UGGC- -5'
23643 3' -54.6 NC_005261.1 + 121364 0.66 0.945625
Target:  5'- aCAGGUUCGCGUacugcaggcgccCCGCGGCGgcggcgccugcccGAGugCGa -3'
miRNA:   3'- -GUCUGAGCGCA------------GGCGCUGU-------------UUCugGC- -5'
23643 3' -54.6 NC_005261.1 + 121254 0.67 0.921036
Target:  5'- -cGACUCGgGguccgCCGCaGACGGGGcgGCCGc -3'
miRNA:   3'- guCUGAGCgCa----GGCG-CUGUUUC--UGGC- -5'
23643 3' -54.6 NC_005261.1 + 121131 0.73 0.624877
Target:  5'- gAGGCgcgggCGCGagCGCGAguAGGACCGg -3'
miRNA:   3'- gUCUGa----GCGCagGCGCUguUUCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.