miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23643 3' -54.6 NC_005261.1 + 120956 0.66 0.941541
Target:  5'- gAGGCUCGCGccCCGCGGggcgcgugccgcCGcAGGCCc -3'
miRNA:   3'- gUCUGAGCGCa-GGCGCU------------GUuUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 119124 0.69 0.845283
Target:  5'- gUAGGC-CGCGgCCGCGGCGc-GGCCa -3'
miRNA:   3'- -GUCUGaGCGCaGGCGCUGUuuCUGGc -5'
23643 3' -54.6 NC_005261.1 + 118857 0.7 0.802598
Target:  5'- aGGGCggCGCGcCCGCGGCccuGGCCu -3'
miRNA:   3'- gUCUGa-GCGCaGGCGCUGuuuCUGGc -5'
23643 3' -54.6 NC_005261.1 + 118146 0.66 0.929702
Target:  5'- -cGGCUCGCGcagacgcuggccgUCGCGGCGGGGcuuGCCGu -3'
miRNA:   3'- guCUGAGCGCa------------GGCGCUGUUUC---UGGC- -5'
23643 3' -54.6 NC_005261.1 + 118057 0.7 0.775049
Target:  5'- --cGCUgGCGgCCGCGGCAgcGGCCGc -3'
miRNA:   3'- gucUGAgCGCaGGCGCUGUuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 117901 0.68 0.875962
Target:  5'- cCAGACgggugaGCGgCUGCGcgggaACGAAGGCCGg -3'
miRNA:   3'- -GUCUGag----CGCaGGCGC-----UGUUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 117765 0.67 0.915306
Target:  5'- -cGACUCGgGUCCG-GAUcgGGGCgGg -3'
miRNA:   3'- guCUGAGCgCAGGCgCUGuuUCUGgC- -5'
23643 3' -54.6 NC_005261.1 + 117682 0.68 0.875962
Target:  5'- -cGGC-CGgGcCCGCGGCG-AGGCCGg -3'
miRNA:   3'- guCUGaGCgCaGGCGCUGUuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 116492 0.67 0.91589
Target:  5'- gCGGGCgCGCGguauaaagagcgccgCCGCGGCGgcgcGAGGCCc -3'
miRNA:   3'- -GUCUGaGCGCa--------------GGCGCUGU----UUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 116089 0.8 0.267521
Target:  5'- uGGAUgcCGCgGUCCGCGACGAAGAUCGg -3'
miRNA:   3'- gUCUGa-GCG-CAGGCGCUGUUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 115484 0.66 0.936777
Target:  5'- gCGGGCUCG-G-CCGCGGCGgcGcGCCGc -3'
miRNA:   3'- -GUCUGAGCgCaGGCGCUGUuuC-UGGC- -5'
23643 3' -54.6 NC_005261.1 + 115204 0.67 0.915306
Target:  5'- cCAGcGCccgUGCGUCCGCGGCGc-GAUCGu -3'
miRNA:   3'- -GUC-UGa--GCGCAGGCGCUGUuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 108317 0.69 0.828743
Target:  5'- cCAGACggccgcCGCGugcUCCGCGACccgcgccAGGGCCGc -3'
miRNA:   3'- -GUCUGa-----GCGC---AGGCGCUGu------UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 108177 0.67 0.903127
Target:  5'- aGGGCgCGCGgCCGCGGCuccGGGCgCGa -3'
miRNA:   3'- gUCUGaGCGCaGGCGCUGuu-UCUG-GC- -5'
23643 3' -54.6 NC_005261.1 + 107728 0.67 0.903127
Target:  5'- gCAGGCggcugCGCcucggCCGCGGgGGGGGCCa -3'
miRNA:   3'- -GUCUGa----GCGca---GGCGCUgUUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 107680 0.66 0.946067
Target:  5'- cCGGGCgUUGcCG-CCGCGGCGGGGgcGCCGc -3'
miRNA:   3'- -GUCUG-AGC-GCaGGCGCUGUUUC--UGGC- -5'
23643 3' -54.6 NC_005261.1 + 104827 0.69 0.853263
Target:  5'- -cGGCgUCGCGgggCCGCGccACGcGGACCGc -3'
miRNA:   3'- guCUG-AGCGCa--GGCGC--UGUuUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 104507 0.69 0.853263
Target:  5'- gCAGccGCUcCGUGgcggCCGCGACGgcGGCCGc -3'
miRNA:   3'- -GUC--UGA-GCGCa---GGCGCUGUuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 104325 0.74 0.563498
Target:  5'- gCGGACgcgCGCGUCCaGCGGCc--GGCCGu -3'
miRNA:   3'- -GUCUGa--GCGCAGG-CGCUGuuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 103943 0.67 0.915306
Target:  5'- cCAGACgcugcagcggCGCGaCCGCGGCGGccGCCa -3'
miRNA:   3'- -GUCUGa---------GCGCaGGCGCUGUUucUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.