miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23643 3' -54.6 NC_005261.1 + 103513 0.74 0.563498
Target:  5'- gCGGACggcgGCGUCCGCGGCAuccGCCGc -3'
miRNA:   3'- -GUCUGag--CGCAGGCGCUGUuucUGGC- -5'
23643 3' -54.6 NC_005261.1 + 102564 0.67 0.915306
Target:  5'- gCGGACaccgccUCGcCGUCCGCGuCGgcGGCCu -3'
miRNA:   3'- -GUCUG------AGC-GCAGGCGCuGUuuCUGGc -5'
23643 3' -54.6 NC_005261.1 + 101717 0.67 0.909336
Target:  5'- cCAGcuGCgccagCGCGcCCGCGAUcAGGGCCu -3'
miRNA:   3'- -GUC--UGa----GCGCaGGCGCUGuUUCUGGc -5'
23643 3' -54.6 NC_005261.1 + 101408 0.67 0.926525
Target:  5'- gCAGcgccGCUUGCGUCa-CGACGucGGCCGc -3'
miRNA:   3'- -GUC----UGAGCGCAGgcGCUGUuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 98733 0.66 0.946067
Target:  5'- gGGGCaCGCGgCCGCGcggGCGuuGGCCGc -3'
miRNA:   3'- gUCUGaGCGCaGGCGC---UGUuuCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 98285 0.72 0.655741
Target:  5'- -cGACgcccggCGCGUCCGCGGCcucGGGGGCgGg -3'
miRNA:   3'- guCUGa-----GCGCAGGCGCUG---UUUCUGgC- -5'
23643 3' -54.6 NC_005261.1 + 98041 0.67 0.926525
Target:  5'- gCGGuACUgGCGgCCGCGgGCGgcGGGACCGc -3'
miRNA:   3'- -GUC-UGAgCGCaGGCGC-UGU--UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 97844 0.66 0.931772
Target:  5'- gGGGCg-GCGggcgccgCCGCGGCAGcgcGGCCGg -3'
miRNA:   3'- gUCUGagCGCa------GGCGCUGUUu--CUGGC- -5'
23643 3' -54.6 NC_005261.1 + 97666 0.66 0.946067
Target:  5'- gGGGC-CgGCGUCCGCGgggcuuggGCGGGGcuGCCGg -3'
miRNA:   3'- gUCUGaG-CGCAGGCGC--------UGUUUC--UGGC- -5'
23643 3' -54.6 NC_005261.1 + 96469 0.67 0.903127
Target:  5'- aAGGC-CGCGcUCCGCGGCuGGGGgUGa -3'
miRNA:   3'- gUCUGaGCGC-AGGCGCUGuUUCUgGC- -5'
23643 3' -54.6 NC_005261.1 + 95818 0.69 0.853263
Target:  5'- gGGGCUCGCGguccUCGCGGCGcuuguGGGCgGa -3'
miRNA:   3'- gUCUGAGCGCa---GGCGCUGUu----UCUGgC- -5'
23643 3' -54.6 NC_005261.1 + 95654 0.66 0.936777
Target:  5'- -cGACgCGCGgcgCCGCGAC--GGGCgCGg -3'
miRNA:   3'- guCUGaGCGCa--GGCGCUGuuUCUG-GC- -5'
23643 3' -54.6 NC_005261.1 + 95134 0.69 0.81148
Target:  5'- -uGGCUCGCGUCCGCcuGCuggucGCCGg -3'
miRNA:   3'- guCUGAGCGCAGGCGc-UGuuuc-UGGC- -5'
23643 3' -54.6 NC_005261.1 + 95079 0.72 0.686433
Target:  5'- --cGCgagCGCGaCCGCGACGgcGAGGCCGa -3'
miRNA:   3'- gucUGa--GCGCaGGCGCUGU--UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 94416 0.66 0.936777
Target:  5'- aGGGCgCGaCGUCCGCGGCGccGcCCc -3'
miRNA:   3'- gUCUGaGC-GCAGGCGCUGUuuCuGGc -5'
23643 3' -54.6 NC_005261.1 + 93927 0.66 0.940137
Target:  5'- gCGGGCUUGCGccgUCCGCGggcgccgccuccggGCGGucGGCCGu -3'
miRNA:   3'- -GUCUGAGCGC---AGGCGC--------------UGUUu-CUGGC- -5'
23643 3' -54.6 NC_005261.1 + 93479 0.71 0.745363
Target:  5'- gGGGCgCGCGUcgcCCGCGGCGAAGcgcgcgaACCGc -3'
miRNA:   3'- gUCUGaGCGCA---GGCGCUGUUUC-------UGGC- -5'
23643 3' -54.6 NC_005261.1 + 92641 0.67 0.909336
Target:  5'- gGGAC-CGgGaCCGgGACcGGGACCGg -3'
miRNA:   3'- gUCUGaGCgCaGGCgCUGuUUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 91688 0.75 0.523451
Target:  5'- gAGACgacgCGCGcCUGCGACAgccggcugcAAGGCCGg -3'
miRNA:   3'- gUCUGa---GCGCaGGCGCUGU---------UUCUGGC- -5'
23643 3' -54.6 NC_005261.1 + 91120 0.74 0.583836
Target:  5'- -cGuCUCGCGcgCCGCGGCcGAGGCCu -3'
miRNA:   3'- guCuGAGCGCa-GGCGCUGuUUCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.