Results 41 - 60 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23643 | 3' | -54.6 | NC_005261.1 | + | 1174 | 0.74 | 0.543353 |
Target: 5'- -cGGCcCGCG-CCGCGGCcGGGGCCGg -3' miRNA: 3'- guCUGaGCGCaGGCGCUGuUUCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 91688 | 0.75 | 0.523451 |
Target: 5'- gAGACgacgCGCGcCUGCGACAgccggcugcAAGGCCGg -3' miRNA: 3'- gUCUGa---GCGCaGGCGCUGU---------UUCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 130474 | 0.75 | 0.502861 |
Target: 5'- -cGGCUCGCGgcgugccUCgGCGGCGAGGGCCc -3' miRNA: 3'- guCUGAGCGC-------AGgCGCUGUUUCUGGc -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 28789 | 0.77 | 0.420053 |
Target: 5'- gCGGgcGCUCGCGgCCGCGGCGGAGGCa- -3' miRNA: 3'- -GUC--UGAGCGCaGGCGCUGUUUCUGgc -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 116089 | 0.8 | 0.267521 |
Target: 5'- uGGAUgcCGCgGUCCGCGACGAAGAUCGg -3' miRNA: 3'- gUCUGa-GCG-CAGGCGCUGUUUCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 37788 | 0.73 | 0.644432 |
Target: 5'- aCGGACUcccCGCGUgCGUGACGAcgcuggaGGACCa -3' miRNA: 3'- -GUCUGA---GCGCAgGCGCUGUU-------UCUGGc -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 14757 | 0.73 | 0.645461 |
Target: 5'- -cGGCgcCGCG-CCGCGACAGggGGGCCGc -3' miRNA: 3'- guCUGa-GCGCaGGCGCUGUU--UCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 47332 | 0.71 | 0.756021 |
Target: 5'- aAGGCgcgCGCGUCgGCGACGAcgcAGucgaaGCCGa -3' miRNA: 3'- gUCUGa--GCGCAGgCGCUGUU---UC-----UGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 135085 | 0.71 | 0.756021 |
Target: 5'- gCGGGCUCGCGgccCgGCGGCGGagcgcgaggcGGACCc -3' miRNA: 3'- -GUCUGAGCGCa--GgCGCUGUU----------UCUGGc -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 93479 | 0.71 | 0.745363 |
Target: 5'- gGGGCgCGCGUcgcCCGCGGCGAAGcgcgcgaACCGc -3' miRNA: 3'- gUCUGaGCGCA---GGCGCUGUUUC-------UGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 129690 | 0.71 | 0.736551 |
Target: 5'- -cGACUCGgG-CCGgGGCcGGGGCCGg -3' miRNA: 3'- guCUGAGCgCaGGCgCUGuUUCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 73113 | 0.71 | 0.726674 |
Target: 5'- cCAGAaagccCGCGUCCGCG-CGGuccccGGGCCGg -3' miRNA: 3'- -GUCUga---GCGCAGGCGCuGUU-----UCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 121820 | 0.71 | 0.726674 |
Target: 5'- uGGGCUCuGCGggccgCCGCGGCGgcGcACCGg -3' miRNA: 3'- gUCUGAG-CGCa----GGCGCUGUuuC-UGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 125966 | 0.71 | 0.726674 |
Target: 5'- gCAGcACuUCGC-UCgGCGACGGGGGCCGc -3' miRNA: 3'- -GUC-UG-AGCGcAGgCGCUGUUUCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 2733 | 0.71 | 0.716714 |
Target: 5'- -cGACUUGCGcuugcgCCGCGGC--GGGCCGu -3' miRNA: 3'- guCUGAGCGCa-----GGCGCUGuuUCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 86490 | 0.71 | 0.706681 |
Target: 5'- cCGGGCcggCGCcuGUCUGCGGCAGGGGCUu -3' miRNA: 3'- -GUCUGa--GCG--CAGGCGCUGUUUCUGGc -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 84966 | 0.71 | 0.706681 |
Target: 5'- gAGGCgucgggCGCGUCCGCGAUgc--GCCGg -3' miRNA: 3'- gUCUGa-----GCGCAGGCGCUGuuucUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 95079 | 0.72 | 0.686433 |
Target: 5'- --cGCgagCGCGaCCGCGACGgcGAGGCCGa -3' miRNA: 3'- gucUGa--GCGCaGGCGCUGU--UUCUGGC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 98285 | 0.72 | 0.655741 |
Target: 5'- -cGACgcccggCGCGUCCGCGGCcucGGGGGCgGg -3' miRNA: 3'- guCUGa-----GCGCAGGCGCUG---UUUCUGgC- -5' |
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23643 | 3' | -54.6 | NC_005261.1 | + | 48328 | 0.72 | 0.655741 |
Target: 5'- cCGGGCUCGgGggcgCgCGCGGCG-AGGCCGa -3' miRNA: 3'- -GUCUGAGCgCa---G-GCGCUGUuUCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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