miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23643 5' -56.8 NC_005261.1 + 28801 0.66 0.862212
Target:  5'- gGCCGCggcggaggCAGCcGCCGCcgaAGCCG-AGGc -3'
miRNA:   3'- -CGGCGa-------GUUGaCGGCGa--UCGGCgUUC- -5'
23643 5' -56.8 NC_005261.1 + 35666 0.66 0.862212
Target:  5'- cCCGCUCc-CUGCCG---GCCGCAc- -3'
miRNA:   3'- cGGCGAGuuGACGGCgauCGGCGUuc -5'
23643 5' -56.8 NC_005261.1 + 60221 0.66 0.862212
Target:  5'- cGCCGCggGGCgcccccaggGCCGCcuccGCCGCGGc -3'
miRNA:   3'- -CGGCGagUUGa--------CGGCGau--CGGCGUUc -5'
23643 5' -56.8 NC_005261.1 + 82806 0.66 0.862212
Target:  5'- cGCCGCggccaccugCAGCcggUGCCGCgcucccgcGCgGCAAGc -3'
miRNA:   3'- -CGGCGa--------GUUG---ACGGCGau------CGgCGUUC- -5'
23643 5' -56.8 NC_005261.1 + 59219 0.66 0.862212
Target:  5'- cCCGuCUCGuAgUGCCGCcgGGCCacgaGCGAGa -3'
miRNA:   3'- cGGC-GAGU-UgACGGCGa-UCGG----CGUUC- -5'
23643 5' -56.8 NC_005261.1 + 115492 0.66 0.862212
Target:  5'- gGCCGCggCGGCgcGCCGC-AGCCcccGCAc- -3'
miRNA:   3'- -CGGCGa-GUUGa-CGGCGaUCGG---CGUuc -5'
23643 5' -56.8 NC_005261.1 + 42632 0.66 0.862212
Target:  5'- aGCgGggaCUCGGCcGCCGC-GGCCGCGc- -3'
miRNA:   3'- -CGgC---GAGUUGaCGGCGaUCGGCGUuc -5'
23643 5' -56.8 NC_005261.1 + 100994 0.66 0.862212
Target:  5'- cGCCGC---GCU-CCGCcAGCCGCGc- -3'
miRNA:   3'- -CGGCGaguUGAcGGCGaUCGGCGUuc -5'
23643 5' -56.8 NC_005261.1 + 135371 0.66 0.862212
Target:  5'- cGCCGCgUCAcCUGggagaCGCUcaugguccacGGCCGCGAc -3'
miRNA:   3'- -CGGCG-AGUuGACg----GCGA----------UCGGCGUUc -5'
23643 5' -56.8 NC_005261.1 + 64053 0.66 0.860674
Target:  5'- cGCCGCguggugcgccacCGGCUGCCGCacGGUgGCGu- -3'
miRNA:   3'- -CGGCGa-----------GUUGACGGCGa-UCGgCGUuc -5'
23643 5' -56.8 NC_005261.1 + 72759 0.66 0.860674
Target:  5'- gGCCGCaugccCAGCacggcgGCCGCgcacgcguccggGGCCGCGGa -3'
miRNA:   3'- -CGGCGa----GUUGa-----CGGCGa-----------UCGGCGUUc -5'
23643 5' -56.8 NC_005261.1 + 20206 0.66 0.859902
Target:  5'- gGCCGC-CAaaggccccgcgcccGCUGCCugGCcAGCCGCu-- -3'
miRNA:   3'- -CGGCGaGU--------------UGACGG--CGaUCGGCGuuc -5'
23643 5' -56.8 NC_005261.1 + 39029 0.66 0.857573
Target:  5'- uCCGCgagCAGCUccacgcggugauccgGUCGCggaAGCCGCGAa -3'
miRNA:   3'- cGGCGa--GUUGA---------------CGGCGa--UCGGCGUUc -5'
23643 5' -56.8 NC_005261.1 + 89470 0.66 0.854438
Target:  5'- aGCgaGUUCgAGCUGCUGCUGGCCu---- -3'
miRNA:   3'- -CGg-CGAG-UUGACGGCGAUCGGcguuc -5'
23643 5' -56.8 NC_005261.1 + 74705 0.66 0.854438
Target:  5'- cGCCGCgcgGGCgcggaaccggGCCGCggcagcGGCCGCGGa -3'
miRNA:   3'- -CGGCGag-UUGa---------CGGCGa-----UCGGCGUUc -5'
23643 5' -56.8 NC_005261.1 + 11924 0.66 0.854438
Target:  5'- gGCCGg-CGGCUGCgGCggcccgcGCCGCGGc -3'
miRNA:   3'- -CGGCgaGUUGACGgCGau-----CGGCGUUc -5'
23643 5' -56.8 NC_005261.1 + 13656 0.66 0.854438
Target:  5'- cGCCGUgCcGCcGCCGCgggggGGgCGCGGGg -3'
miRNA:   3'- -CGGCGaGuUGaCGGCGa----UCgGCGUUC- -5'
23643 5' -56.8 NC_005261.1 + 111304 0.66 0.854438
Target:  5'- cGCCGCUgCcuCcGCCGCc-GCCGCGc- -3'
miRNA:   3'- -CGGCGA-GuuGaCGGCGauCGGCGUuc -5'
23643 5' -56.8 NC_005261.1 + 134014 0.66 0.854438
Target:  5'- aCC-CUCAACUacGCCGCc-GCCGCGc- -3'
miRNA:   3'- cGGcGAGUUGA--CGGCGauCGGCGUuc -5'
23643 5' -56.8 NC_005261.1 + 103971 0.66 0.854438
Target:  5'- gGCCGC-CAcacggaagcGCUcGCCGCc-GCCGCGGu -3'
miRNA:   3'- -CGGCGaGU---------UGA-CGGCGauCGGCGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.