miRNA display CGI


Results 1 - 20 of 576 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23644 3' -60.7 NC_005261.1 + 50481 0.66 0.706567
Target:  5'- cGCuCGCGUccgcGGCGgcccccAGCGcCUCGCCCaGCc -3'
miRNA:   3'- uCGcGCGCA----UCGC------UCGU-GAGCGGG-CG- -5'
23644 3' -60.7 NC_005261.1 + 53467 0.66 0.706567
Target:  5'- gGGCGgGaCGcAGCaGGCGCgcacuagCGCUCGCg -3'
miRNA:   3'- -UCGCgC-GCaUCGcUCGUGa------GCGGGCG- -5'
23644 3' -60.7 NC_005261.1 + 99494 0.66 0.706567
Target:  5'- cAGCGCcgccGCGUccucCGAGgGCcCGCCCGUu -3'
miRNA:   3'- -UCGCG----CGCAuc--GCUCgUGaGCGGGCG- -5'
23644 3' -60.7 NC_005261.1 + 127717 0.66 0.706567
Target:  5'- uGCGCGUggccugccugGUAGCGGGaGCUUGgCgGCg -3'
miRNA:   3'- uCGCGCG----------CAUCGCUCgUGAGCgGgCG- -5'
23644 3' -60.7 NC_005261.1 + 98942 0.66 0.706567
Target:  5'- cAGCGCGUccucGUAGuCGAGCGuCagGCUCGg -3'
miRNA:   3'- -UCGCGCG----CAUC-GCUCGU-GagCGGGCg -5'
23644 3' -60.7 NC_005261.1 + 93590 0.66 0.706567
Target:  5'- cGCGCGCucGGCGA-C-CUCGCCguCGCc -3'
miRNA:   3'- uCGCGCGcaUCGCUcGuGAGCGG--GCG- -5'
23644 3' -60.7 NC_005261.1 + 51212 0.66 0.706567
Target:  5'- gGGCGCGCugcuGCuGGGCGCgcuagcCGCCUGg -3'
miRNA:   3'- -UCGCGCGcau-CG-CUCGUGa-----GCGGGCg -5'
23644 3' -60.7 NC_005261.1 + 74168 0.66 0.706567
Target:  5'- uGCGCGUGcucaaGGUGAcGCGCcUGCCgGCu -3'
miRNA:   3'- uCGCGCGCa----UCGCU-CGUGaGCGGgCG- -5'
23644 3' -60.7 NC_005261.1 + 68121 0.66 0.706567
Target:  5'- gAGCuGCGCGggccGCG-GCGCggCGaCCGCg -3'
miRNA:   3'- -UCG-CGCGCau--CGCuCGUGa-GCgGGCG- -5'
23644 3' -60.7 NC_005261.1 + 81282 0.66 0.706567
Target:  5'- uGCGCGagccggAGCGcGGCGCgcaCGUCCGUg -3'
miRNA:   3'- uCGCGCgca---UCGC-UCGUGa--GCGGGCG- -5'
23644 3' -60.7 NC_005261.1 + 76365 0.66 0.706567
Target:  5'- cGCGCGC---GCGuGCACcCGCgCUGCc -3'
miRNA:   3'- uCGCGCGcauCGCuCGUGaGCG-GGCG- -5'
23644 3' -60.7 NC_005261.1 + 50074 0.66 0.705591
Target:  5'- uGC-CGCGUAGUcgcagaugaccacGuGCACgcuGCCCGCg -3'
miRNA:   3'- uCGcGCGCAUCG-------------CuCGUGag-CGGGCG- -5'
23644 3' -60.7 NC_005261.1 + 75390 0.66 0.702657
Target:  5'- uGGCGCGCGccaucgacgaGGGCGCg-GCCCGg -3'
miRNA:   3'- -UCGCGCGCaucg------CUCGUGagCGGGCg -5'
23644 3' -60.7 NC_005261.1 + 119126 0.66 0.700699
Target:  5'- aGGC-CGCGgccGCG-GCGCggccaucucggaucCGCCCGCg -3'
miRNA:   3'- -UCGcGCGCau-CGCuCGUGa-------------GCGGGCG- -5'
23644 3' -60.7 NC_005261.1 + 109844 0.66 0.696776
Target:  5'- uGGCGUGCcguugGUGGCGgcuccugggGGCAgCgggGCCCGCg -3'
miRNA:   3'- -UCGCGCG-----CAUCGC---------UCGU-Gag-CGGGCG- -5'
23644 3' -60.7 NC_005261.1 + 85683 0.66 0.696776
Target:  5'- uGCGCGCGaaaguuGCGcccgucCACUugcUGCCCGCa -3'
miRNA:   3'- uCGCGCGCau----CGCuc----GUGA---GCGGGCG- -5'
23644 3' -60.7 NC_005261.1 + 102165 0.66 0.696776
Target:  5'- uGCGCcaGCGgcGGCG-GCACgUCGaUCCGCg -3'
miRNA:   3'- uCGCG--CGCa-UCGCuCGUG-AGC-GGGCG- -5'
23644 3' -60.7 NC_005261.1 + 86713 0.66 0.696776
Target:  5'- cAGCGCGUccAGCuucgccGC-CUCGUCCGCc -3'
miRNA:   3'- -UCGCGCGcaUCGcu----CGuGAGCGGGCG- -5'
23644 3' -60.7 NC_005261.1 + 127330 0.66 0.696776
Target:  5'- cGCcCGCGggggccggAGCGgcggGGCGCUgGgCCCGCg -3'
miRNA:   3'- uCGcGCGCa-------UCGC----UCGUGAgC-GGGCG- -5'
23644 3' -60.7 NC_005261.1 + 32913 0.66 0.696776
Target:  5'- gGGCGCGCGUGGgGGGCG---GCggGCg -3'
miRNA:   3'- -UCGCGCGCAUCgCUCGUgagCGggCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.