miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23644 5' -54.1 NC_005261.1 + 74880 0.66 0.952911
Target:  5'- aCGCG-GCGGCg---GCggCGGAGUCGg -3'
miRNA:   3'- aGUGCuCGUCGagcaCGa-GCUUCAGC- -5'
23644 5' -54.1 NC_005261.1 + 98936 0.66 0.948723
Target:  5'- -gGgGGGCAGCgCGUcCUCGuAGUCGa -3'
miRNA:   3'- agUgCUCGUCGaGCAcGAGCuUCAGC- -5'
23644 5' -54.1 NC_005261.1 + 81283 0.66 0.946095
Target:  5'- gCGCGAGCcggAGCgcggcgcgcacgucCGUGCcguugUCGggGUCGu -3'
miRNA:   3'- aGUGCUCG---UCGa-------------GCACG-----AGCuuCAGC- -5'
23644 5' -54.1 NC_005261.1 + 65542 0.66 0.944294
Target:  5'- gCGCGGGCAGCagcgCGUGC-CaGgcGUCc -3'
miRNA:   3'- aGUGCUCGUCGa---GCACGaG-CuuCAGc -5'
23644 5' -54.1 NC_005261.1 + 83408 0.66 0.944294
Target:  5'- -gGCGAGCAG---GUGCgCGAAGUUGa -3'
miRNA:   3'- agUGCUCGUCgagCACGaGCUUCAGC- -5'
23644 5' -54.1 NC_005261.1 + 41941 0.66 0.940101
Target:  5'- gCugGAGCgcacgcggcacuuuAGCUUgugGUGCUCGAagguggacucgagagAGUCGg -3'
miRNA:   3'- aGugCUCG--------------UCGAG---CACGAGCU---------------UCAGC- -5'
23644 5' -54.1 NC_005261.1 + 135661 0.66 0.934707
Target:  5'- gCGCGGGCGGCccucGCUCGAGGa-- -3'
miRNA:   3'- aGUGCUCGUCGagcaCGAGCUUCagc -5'
23644 5' -54.1 NC_005261.1 + 54137 0.67 0.924134
Target:  5'- cCACGGcacgccgcacGCGGC-CGUGCgCGggGUUGc -3'
miRNA:   3'- aGUGCU----------CGUCGaGCACGaGCuuCAGC- -5'
23644 5' -54.1 NC_005261.1 + 112666 0.67 0.924134
Target:  5'- gUACGAGCGGCUgGagcgcgagggGCUgGgcGUCGa -3'
miRNA:   3'- aGUGCUCGUCGAgCa---------CGAgCuuCAGC- -5'
23644 5' -54.1 NC_005261.1 + 38475 0.67 0.924134
Target:  5'- cCugGAGCAGCaCGgccGCggCGgcGUCGa -3'
miRNA:   3'- aGugCUCGUCGaGCa--CGa-GCuuCAGC- -5'
23644 5' -54.1 NC_005261.1 + 43650 0.67 0.918478
Target:  5'- gCGCG-GCGGUgaCGUGCUCuucGAGUCGc -3'
miRNA:   3'- aGUGCuCGUCGa-GCACGAGc--UUCAGC- -5'
23644 5' -54.1 NC_005261.1 + 113526 0.67 0.918478
Target:  5'- gCGCGAGgcCAGC-CG-GCUCGggGcCGu -3'
miRNA:   3'- aGUGCUC--GUCGaGCaCGAGCuuCaGC- -5'
23644 5' -54.1 NC_005261.1 + 133654 0.67 0.912575
Target:  5'- gCGCGAGC-GCUgCGUGCUCGccucCGg -3'
miRNA:   3'- aGUGCUCGuCGA-GCACGAGCuucaGC- -5'
23644 5' -54.1 NC_005261.1 + 105142 0.67 0.912575
Target:  5'- gCGCGcGCAGgucCUCGcgGCUCGAGGgCGg -3'
miRNA:   3'- aGUGCuCGUC---GAGCa-CGAGCUUCaGC- -5'
23644 5' -54.1 NC_005261.1 + 43572 0.67 0.906427
Target:  5'- cCGCGAGCGGCgcuucgcCGUGCgCGAcgccGUCu -3'
miRNA:   3'- aGUGCUCGUCGa------GCACGaGCUu---CAGc -5'
23644 5' -54.1 NC_005261.1 + 124132 0.67 0.906427
Target:  5'- aUCACGcGCAGCUCGUGC-C--AGUa- -3'
miRNA:   3'- -AGUGCuCGUCGAGCACGaGcuUCAgc -5'
23644 5' -54.1 NC_005261.1 + 37935 0.68 0.902622
Target:  5'- gUACGAGCgccggagccgcgucgAGCggGUGCUgccccCGAAGUCGg -3'
miRNA:   3'- aGUGCUCG---------------UCGagCACGA-----GCUUCAGC- -5'
23644 5' -54.1 NC_005261.1 + 50840 0.68 0.900037
Target:  5'- cCGCGAGCuGGCgccUGUgGCUCGcccAGGUCGg -3'
miRNA:   3'- aGUGCUCG-UCGa--GCA-CGAGC---UUCAGC- -5'
23644 5' -54.1 NC_005261.1 + 127816 0.68 0.893407
Target:  5'- -gGCGGGCcGCUCGcGCUCGcGGcCGc -3'
miRNA:   3'- agUGCUCGuCGAGCaCGAGCuUCaGC- -5'
23644 5' -54.1 NC_005261.1 + 64492 0.68 0.893407
Target:  5'- -aGCGGGUGGCgcggGUGCUCGggGcccgCGg -3'
miRNA:   3'- agUGCUCGUCGag--CACGAGCuuCa---GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.