miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 48889 0.66 0.863404
Target:  5'- cCGccGAACagCCGCaGUUGGCCucuagcgcgagcccgGGCGCCa -3'
miRNA:   3'- -GCucUUUGa-GGCG-CAGCCGG---------------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 52411 0.66 0.861158
Target:  5'- uCGAGGcuaaaguccucgaaGGCgUCCGCGUCcagGGCCAcgagguccccggcgcGCGUCa -3'
miRNA:   3'- -GCUCU--------------UUG-AGGCGCAG---CCGGU---------------CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 49446 0.66 0.860405
Target:  5'- gCGAGcccGCgcgcgCCGCGgaaGGCgGGCGCg -3'
miRNA:   3'- -GCUCuu-UGa----GGCGCag-CCGgUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 126413 0.66 0.860405
Target:  5'- -aAGAGACUUCGCG-C-GCCGuCGCCa -3'
miRNA:   3'- gcUCUUUGAGGCGCaGcCGGUcGCGG- -5'
23645 3' -57.6 NC_005261.1 + 80183 0.66 0.860405
Target:  5'- uCGAGcgugccAGCUCCugcagguacaGC-UUGGCCAGCGCg -3'
miRNA:   3'- -GCUCu-----UUGAGG----------CGcAGCCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 90382 0.66 0.860405
Target:  5'- gCGGcGAGGCcCCGcCGgcggGGCUGGCGCCc -3'
miRNA:   3'- -GCU-CUUUGaGGC-GCag--CCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 85226 0.66 0.860405
Target:  5'- gGAGAGcagCCGCGcCGGCaucugguuGCGCUg -3'
miRNA:   3'- gCUCUUugaGGCGCaGCCGgu------CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 4644 0.66 0.860405
Target:  5'- cCGAGucccuaaaUCCaGUGUCGGCCgcGGCGgCg -3'
miRNA:   3'- -GCUCuuug----AGG-CGCAGCCGG--UCGCgG- -5'
23645 3' -57.6 NC_005261.1 + 121380 0.66 0.860405
Target:  5'- -cAGgcGCcCCGCGgCGG-CGGCGCCu -3'
miRNA:   3'- gcUCuuUGaGGCGCaGCCgGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 133700 0.66 0.860405
Target:  5'- -uGGGAGCUgCGCGacc-CCGGCGCCg -3'
miRNA:   3'- gcUCUUUGAgGCGCagccGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 70865 0.66 0.860405
Target:  5'- aGGGcgGCcgCCGUGgcgUGGCCGGCGgUg -3'
miRNA:   3'- gCUCuuUGa-GGCGCa--GCCGGUCGCgG- -5'
23645 3' -57.6 NC_005261.1 + 135111 0.66 0.860405
Target:  5'- gCGAGGcgGACcCCGCGUCucCgCAGCGCg -3'
miRNA:   3'- -GCUCU--UUGaGGCGCAGccG-GUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 1329 0.66 0.860405
Target:  5'- cCGGGAcGCcgCCGCGcCGcGCCugcaccAGCGUCu -3'
miRNA:   3'- -GCUCUuUGa-GGCGCaGC-CGG------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 15011 0.66 0.860405
Target:  5'- gCGGGAGGaggaGuUGUCGGCgGGUGCCg -3'
miRNA:   3'- -GCUCUUUgaggC-GCAGCCGgUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 31311 0.66 0.860405
Target:  5'- gCGcGggGC-CCGCGggcgCGcucgccGCCAGCGCg -3'
miRNA:   3'- -GCuCuuUGaGGCGCa---GC------CGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 127531 0.66 0.858135
Target:  5'- gCGAGAcGGCcucgcaaaaaauugUCCgguuguacgcguGCGUCGGCCcgcaccagGGCGCCc -3'
miRNA:   3'- -GCUCU-UUG--------------AGG------------CGCAGCCGG--------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 126905 0.66 0.855848
Target:  5'- gGGGAAGCccagcucggucugcaUCCguuccagcaGCG-CGGCCaggGGCGCCg -3'
miRNA:   3'- gCUCUUUG---------------AGG---------CGCaGCCGG---UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 62210 0.66 0.85277
Target:  5'- gCGAGGG--UgCGCG-CGGCCGcgucuGCGCCc -3'
miRNA:   3'- -GCUCUUugAgGCGCaGCCGGU-----CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 109453 0.66 0.85277
Target:  5'- aGAGAGGCaacccCCGCuUCGcGCguGCGCg -3'
miRNA:   3'- gCUCUUUGa----GGCGcAGC-CGguCGCGg -5'
23645 3' -57.6 NC_005261.1 + 2228 0.66 0.85277
Target:  5'- gCGAGAGcCcgCCGCGcaccggCGGCCacucaGGcCGCCg -3'
miRNA:   3'- -GCUCUUuGa-GGCGCa-----GCCGG-----UC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.