miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 1814 0.66 0.826232
Target:  5'- cCGGGGuagagCCGCGcguaagCGGCCucggcgcgcgcgaaGGCGCCg -3'
miRNA:   3'- -GCUCUuuga-GGCGCa-----GCCGG--------------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 110224 0.66 0.828725
Target:  5'- uCGGcGAcgcCUCCaGCGUgggCGGCgCGGCGCCc -3'
miRNA:   3'- -GCU-CUuu-GAGG-CGCA---GCCG-GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 14722 0.66 0.834483
Target:  5'- --cGAGAUUCCaGCGUCacgacgguggcaggGGCgauCGGCGCCg -3'
miRNA:   3'- gcuCUUUGAGG-CGCAG--------------CCG---GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 109340 0.66 0.836923
Target:  5'- gCGGGGucGGCggCCGCGUCGccguCCAGcCGCUc -3'
miRNA:   3'- -GCUCU--UUGa-GGCGCAGCc---GGUC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 86816 0.66 0.828725
Target:  5'- uCGAucGACacgCCGUGUCGGCCgccaucaccgaGGCcaGCCg -3'
miRNA:   3'- -GCUcuUUGa--GGCGCAGCCGG-----------UCG--CGG- -5'
23645 3' -57.6 NC_005261.1 + 62601 0.66 0.828725
Target:  5'- cCGGGAAcCggcaGCGguaggCGGCCaucAGCGCCa -3'
miRNA:   3'- -GCUCUUuGagg-CGCa----GCCGG---UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 13799 0.66 0.828725
Target:  5'- gCGGGG---UCCcaaGCGUCGGCCGGCucgacCCg -3'
miRNA:   3'- -GCUCUuugAGG---CGCAGCCGGUCGc----GG- -5'
23645 3' -57.6 NC_005261.1 + 107295 0.66 0.828725
Target:  5'- -cAGgcACUCCGcCG-CGGCCacGGcCGCCg -3'
miRNA:   3'- gcUCuuUGAGGC-GCaGCCGG--UC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 118558 0.66 0.828725
Target:  5'- gCGAGGAcgccguGC-CCGCGcgcgCGGCgGcgcGCGCCg -3'
miRNA:   3'- -GCUCUU------UGaGGCGCa---GCCGgU---CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 59344 0.66 0.828725
Target:  5'- cCGGGucGCcgCCGUcgccacgaggguGUCGcccGCCAGCGCCc -3'
miRNA:   3'- -GCUCuuUGa-GGCG------------CAGC---CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 123068 0.66 0.828725
Target:  5'- uCGAuGAGGCcCCGagaGgCGGCCGGCcacGCCa -3'
miRNA:   3'- -GCU-CUUUGaGGCg--CaGCCGGUCG---CGG- -5'
23645 3' -57.6 NC_005261.1 + 71184 0.66 0.828725
Target:  5'- cCGGGcgcAGCUCgCGgGgcgCGGCCAGCuGCg -3'
miRNA:   3'- -GCUCu--UUGAG-GCgCa--GCCGGUCG-CGg -5'
23645 3' -57.6 NC_005261.1 + 59300 0.66 0.828725
Target:  5'- gCGcAGu-GCcCCGCGucaaaccacUCGGCCAGCGUg -3'
miRNA:   3'- -GC-UCuuUGaGGCGC---------AGCCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 82833 0.66 0.828725
Target:  5'- -----cGCUcCCGCG-CGGCaAGCGCCu -3'
miRNA:   3'- gcucuuUGA-GGCGCaGCCGgUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 126193 0.66 0.828725
Target:  5'- uCGAccAGCcCCGCG-CGGaCCAGCGgCa -3'
miRNA:   3'- -GCUcuUUGaGGCGCaGCC-GGUCGCgG- -5'
23645 3' -57.6 NC_005261.1 + 43300 0.66 0.828725
Target:  5'- gCGGGggGCgCCGgcaGccCGGCCAGCuucGCCc -3'
miRNA:   3'- -GCUCuuUGaGGCg--Ca-GCCGGUCG---CGG- -5'
23645 3' -57.6 NC_005261.1 + 130822 0.66 0.826232
Target:  5'- uCGAGGGccaggccaccgugcGCUCaaccuugcgcgCGCGccCGGCCGGgCGCCg -3'
miRNA:   3'- -GCUCUU--------------UGAG-----------GCGCa-GCCGGUC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 48889 0.66 0.863404
Target:  5'- cCGccGAACagCCGCaGUUGGCCucuagcgcgagcccgGGCGCCa -3'
miRNA:   3'- -GCucUUUGa-GGCG-CAGCCGG---------------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 109875 0.66 0.836923
Target:  5'- aGcGggGC-CCGCG--GGCgGGCGCCc -3'
miRNA:   3'- gCuCuuUGaGGCGCagCCGgUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 54420 0.66 0.836923
Target:  5'- uCGAGGAGCaUCUcCGagGGCC-GCGUCg -3'
miRNA:   3'- -GCUCUUUG-AGGcGCagCCGGuCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.