miRNA display CGI


Results 21 - 40 of 341 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 71184 0.66 0.828725
Target:  5'- cCGGGcgcAGCUCgCGgGgcgCGGCCAGCuGCg -3'
miRNA:   3'- -GCUCu--UUGAG-GCgCa--GCCGGUCG-CGg -5'
23645 3' -57.6 NC_005261.1 + 86816 0.66 0.828725
Target:  5'- uCGAucGACacgCCGUGUCGGCCgccaucaccgaGGCcaGCCg -3'
miRNA:   3'- -GCUcuUUGa--GGCGCAGCCGG-----------UCG--CGG- -5'
23645 3' -57.6 NC_005261.1 + 13421 0.66 0.848095
Target:  5'- gCGA-AGGCgcacCgCGCGUCgaccgggugcaggcaGGCCGGCGCCu -3'
miRNA:   3'- -GCUcUUUGa---G-GCGCAG---------------CCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 125708 0.66 0.84494
Target:  5'- cCGGcGAcGGCcgCCGCGggcUCGGCUGGgGCCg -3'
miRNA:   3'- -GCU-CU-UUGa-GGCGC---AGCCGGUCgCGG- -5'
23645 3' -57.6 NC_005261.1 + 77619 0.66 0.836923
Target:  5'- uCGAGAGccagaUCaugGCccUGGCCGGCGCCa -3'
miRNA:   3'- -GCUCUUug---AGg--CGcaGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 27730 0.66 0.828725
Target:  5'- gGAGGAGCggagaCGCG-CGGgCAGaggaGCCg -3'
miRNA:   3'- gCUCUUUGag---GCGCaGCCgGUCg---CGG- -5'
23645 3' -57.6 NC_005261.1 + 118558 0.66 0.828725
Target:  5'- gCGAGGAcgccguGC-CCGCGcgcgCGGCgGcgcGCGCCg -3'
miRNA:   3'- -GCUCUU------UGaGGCGCa---GCCGgU---CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 126193 0.66 0.828725
Target:  5'- uCGAccAGCcCCGCG-CGGaCCAGCGgCa -3'
miRNA:   3'- -GCUcuUUGaGGCGCaGCC-GGUCGCgG- -5'
23645 3' -57.6 NC_005261.1 + 110224 0.66 0.828725
Target:  5'- uCGGcGAcgcCUCCaGCGUgggCGGCgCGGCGCCc -3'
miRNA:   3'- -GCU-CUuu-GAGG-CGCA---GCCG-GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 13799 0.66 0.828725
Target:  5'- gCGGGG---UCCcaaGCGUCGGCCGGCucgacCCg -3'
miRNA:   3'- -GCUCUuugAGG---CGCAGCCGGUCGc----GG- -5'
23645 3' -57.6 NC_005261.1 + 19138 0.66 0.836923
Target:  5'- -cGGGAACUCCucgGCGcgcaCGGCCAGCcgGCg -3'
miRNA:   3'- gcUCUUUGAGG---CGCa---GCCGGUCG--CGg -5'
23645 3' -57.6 NC_005261.1 + 117910 0.66 0.85277
Target:  5'- uGAGcgGCUgCGCGggaacgaaGGCCGGCugcgGCCc -3'
miRNA:   3'- gCUCuuUGAgGCGCag------CCGGUCG----CGG- -5'
23645 3' -57.6 NC_005261.1 + 67250 0.66 0.84494
Target:  5'- aCGAGGuccgCCGUGUacgccgccagccCGGCCAGCagcaGCCc -3'
miRNA:   3'- -GCUCUuugaGGCGCA------------GCCGGUCG----CGG- -5'
23645 3' -57.6 NC_005261.1 + 42231 0.66 0.84494
Target:  5'- ---cGAGCUCCGC--CGcGCgCAGCGCCu -3'
miRNA:   3'- gcucUUUGAGGCGcaGC-CG-GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 43300 0.66 0.828725
Target:  5'- gCGGGggGCgCCGgcaGccCGGCCAGCuucGCCc -3'
miRNA:   3'- -GCUCuuUGaGGCg--Ca-GCCGGUCG---CGG- -5'
23645 3' -57.6 NC_005261.1 + 130822 0.66 0.826232
Target:  5'- uCGAGGGccaggccaccgugcGCUCaaccuugcgcgCGCGccCGGCCGGgCGCCg -3'
miRNA:   3'- -GCUCUU--------------UGAG-----------GCGCa-GCCGGUC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 109340 0.66 0.836923
Target:  5'- gCGGGGucGGCggCCGCGUCGccguCCAGcCGCUc -3'
miRNA:   3'- -GCUCU--UUGa-GGCGCAGCc---GGUC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 112065 0.66 0.84494
Target:  5'- uCGGGcguGC-CCuCGUCGGCgagGGCGCCa -3'
miRNA:   3'- -GCUCuu-UGaGGcGCAGCCGg--UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 59607 0.66 0.84494
Target:  5'- ------cCUCCGCGgcgCGGCggaugAGCGCCa -3'
miRNA:   3'- gcucuuuGAGGCGCa--GCCGg----UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 50023 0.66 0.84494
Target:  5'- gCGGGcgcccAGCcgCCGCGcgaCGGUgCAGCGCCg -3'
miRNA:   3'- -GCUCu----UUGa-GGCGCa--GCCG-GUCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.