miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 77619 0.66 0.836923
Target:  5'- uCGAGAGccagaUCaugGCccUGGCCGGCGCCa -3'
miRNA:   3'- -GCUCUUug---AGg--CGcaGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 49446 0.66 0.860405
Target:  5'- gCGAGcccGCgcgcgCCGCGgaaGGCgGGCGCg -3'
miRNA:   3'- -GCUCuu-UGa----GGCGCag-CCGgUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 109340 0.66 0.836923
Target:  5'- gCGGGGucGGCggCCGCGUCGccguCCAGcCGCUc -3'
miRNA:   3'- -GCUCU--UUGa-GGCGCAGCc---GGUC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 67481 0.66 0.840152
Target:  5'- -aGGAAGC-CCGCGgccgccgCcagccgcgcguaguaGGCCAGCGUCg -3'
miRNA:   3'- gcUCUUUGaGGCGCa------G---------------CCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 55259 0.66 0.85277
Target:  5'- gCGAGGAGgUCUGCGcccccUGGC--GCGCCg -3'
miRNA:   3'- -GCUCUUUgAGGCGCa----GCCGguCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 123068 0.66 0.828725
Target:  5'- uCGAuGAGGCcCCGagaGgCGGCCGGCcacGCCa -3'
miRNA:   3'- -GCU-CUUUGaGGCg--CaGCCGGUCG---CGG- -5'
23645 3' -57.6 NC_005261.1 + 50023 0.66 0.84494
Target:  5'- gCGGGcgcccAGCcgCCGCGcgaCGGUgCAGCGCCg -3'
miRNA:   3'- -GCUCu----UUGa-GGCGCa--GCCG-GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 15011 0.66 0.860405
Target:  5'- gCGGGAGGaggaGuUGUCGGCgGGUGCCg -3'
miRNA:   3'- -GCUCUUUgaggC-GCAGCCGgUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 2228 0.66 0.85277
Target:  5'- gCGAGAGcCcgCCGCGcaccggCGGCCacucaGGcCGCCg -3'
miRNA:   3'- -GCUCUUuGa-GGCGCa-----GCCGG-----UC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 107295 0.66 0.828725
Target:  5'- -cAGgcACUCCGcCG-CGGCCacGGcCGCCg -3'
miRNA:   3'- gcUCuuUGAGGC-GCaGCCGG--UC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 132636 0.66 0.85277
Target:  5'- cCGAGGAcGCgggCGCGgCGGCCcuAGCgGCCg -3'
miRNA:   3'- -GCUCUU-UGag-GCGCaGCCGG--UCG-CGG- -5'
23645 3' -57.6 NC_005261.1 + 62210 0.66 0.85277
Target:  5'- gCGAGGG--UgCGCG-CGGCCGcgucuGCGCCc -3'
miRNA:   3'- -GCUCUUugAgGCGCaGCCGGU-----CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 31311 0.66 0.860405
Target:  5'- gCGcGggGC-CCGCGggcgCGcucgccGCCAGCGCg -3'
miRNA:   3'- -GCuCuuUGaGGCGCa---GC------CGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 62601 0.66 0.828725
Target:  5'- cCGGGAAcCggcaGCGguaggCGGCCaucAGCGCCa -3'
miRNA:   3'- -GCUCUUuGagg-CGCa----GCCGG---UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 59923 0.66 0.836923
Target:  5'- uCGAcGAGCUCgC-CGUCGGCCaucuccagccgcAGCGCg -3'
miRNA:   3'- -GCUcUUUGAG-GcGCAGCCGG------------UCGCGg -5'
23645 3' -57.6 NC_005261.1 + 112065 0.66 0.84494
Target:  5'- uCGGGcguGC-CCuCGUCGGCgagGGCGCCa -3'
miRNA:   3'- -GCUCuu-UGaGGcGCAGCCGg--UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 59300 0.66 0.828725
Target:  5'- gCGcAGu-GCcCCGCGucaaaccacUCGGCCAGCGUg -3'
miRNA:   3'- -GC-UCuuUGaGGCGC---------AGCCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 126905 0.66 0.855848
Target:  5'- gGGGAAGCccagcucggucugcaUCCguuccagcaGCG-CGGCCaggGGCGCCg -3'
miRNA:   3'- gCUCUUUG---------------AGG---------CGCaGCCGG---UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 130822 0.66 0.826232
Target:  5'- uCGAGGGccaggccaccgugcGCUCaaccuugcgcgCGCGccCGGCCGGgCGCCg -3'
miRNA:   3'- -GCUCUU--------------UGAG-----------GCGCa-GCCGGUC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 86816 0.66 0.828725
Target:  5'- uCGAucGACacgCCGUGUCGGCCgccaucaccgaGGCcaGCCg -3'
miRNA:   3'- -GCUcuUUGa--GGCGCAGCCGG-----------UCG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.