miRNA display CGI


Results 61 - 80 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 15011 0.66 0.860405
Target:  5'- gCGGGAGGaggaGuUGUCGGCgGGUGCCg -3'
miRNA:   3'- -GCUCUUUgaggC-GCAGCCGgUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 107295 0.66 0.828725
Target:  5'- -cAGgcACUCCGcCG-CGGCCacGGcCGCCg -3'
miRNA:   3'- gcUCuuUGAGGC-GCaGCCGG--UC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 109340 0.66 0.836923
Target:  5'- gCGGGGucGGCggCCGCGUCGccguCCAGcCGCUc -3'
miRNA:   3'- -GCUCU--UUGa-GGCGCAGCc---GGUC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 50139 0.66 0.85277
Target:  5'- ---cAAGCUgUGCGUUGGCCGucGCGUCc -3'
miRNA:   3'- gcucUUUGAgGCGCAGCCGGU--CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 106637 0.66 0.836923
Target:  5'- gCGAcGAGCUCgGCGacgUCGcgcucGCCGGCGCg -3'
miRNA:   3'- -GCUcUUUGAGgCGC---AGC-----CGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 70865 0.66 0.860405
Target:  5'- aGGGcgGCcgCCGUGgcgUGGCCGGCGgUg -3'
miRNA:   3'- gCUCuuUGa-GGCGCa--GCCGGUCGCgG- -5'
23645 3' -57.6 NC_005261.1 + 62840 0.66 0.85277
Target:  5'- gCGGGGGACUggcgcgccCCGCGccacgcggCGGCCuuuuauGCGCg -3'
miRNA:   3'- -GCUCUUUGA--------GGCGCa-------GCCGGu-----CGCGg -5'
23645 3' -57.6 NC_005261.1 + 50023 0.66 0.84494
Target:  5'- gCGGGcgcccAGCcgCCGCGcgaCGGUgCAGCGCCg -3'
miRNA:   3'- -GCUCu----UUGa-GGCGCa--GCCG-GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 121380 0.66 0.860405
Target:  5'- -cAGgcGCcCCGCGgCGG-CGGCGCCu -3'
miRNA:   3'- gcUCuuUGaGGCGCaGCCgGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 96275 0.67 0.810953
Target:  5'- aCGAGGAcgacgcuggcgcgGCUUCgGCcUCGGCCGcGCGCa -3'
miRNA:   3'- -GCUCUU-------------UGAGG-CGcAGCCGGU-CGCGg -5'
23645 3' -57.6 NC_005261.1 + 49959 0.67 0.811816
Target:  5'- -aGGAGGCggcgCCGuCGUCauccCCGGCGCCg -3'
miRNA:   3'- gcUCUUUGa---GGC-GCAGcc--GGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 24451 0.67 0.80312
Target:  5'- aCGAGGuguGCUCCGCGcUCcuucCCAGCuCCa -3'
miRNA:   3'- -GCUCUu--UGAGGCGC-AGcc--GGUCGcGG- -5'
23645 3' -57.6 NC_005261.1 + 2344 0.67 0.811816
Target:  5'- uCGGGG---UCCGCGaUCugcgacauccaGGCCAcGCGCCg -3'
miRNA:   3'- -GCUCUuugAGGCGC-AG-----------CCGGU-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 109186 0.67 0.811816
Target:  5'- -uAGcAGCgCCGCGUCgGGCguGCGCa -3'
miRNA:   3'- gcUCuUUGaGGCGCAG-CCGguCGCGg -5'
23645 3' -57.6 NC_005261.1 + 118110 0.67 0.811816
Target:  5'- gCGcAGAcGCUgCGcCGcCGGCUcGCGCCg -3'
miRNA:   3'- -GC-UCUuUGAgGC-GCaGCCGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 76325 0.67 0.80312
Target:  5'- ------cCUCCGCGguguaagCGGCggCAGCGCCc -3'
miRNA:   3'- gcucuuuGAGGCGCa------GCCG--GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 70786 0.67 0.811816
Target:  5'- gCGAGAAggcguccagcaGCucaaagUCCGCGccggCGGCCccgggcGCGCCg -3'
miRNA:   3'- -GCUCUU-----------UG------AGGCGCa---GCCGGu-----CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 88821 0.67 0.811816
Target:  5'- gCGGGGcGGCggCgCGCGcCGGcCCGGCGUCg -3'
miRNA:   3'- -GCUCU-UUGa-G-GCGCaGCC-GGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 88410 0.67 0.807487
Target:  5'- gCGAGGAgcacgacaucuuggACUUCGCGggccaccgcugcUGGCC-GCGCCg -3'
miRNA:   3'- -GCUCUU--------------UGAGGCGCa-----------GCCGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 16237 0.67 0.80312
Target:  5'- uCGGGGcggucGACgUCCGCGcCGgggccGCCGGgGCCg -3'
miRNA:   3'- -GCUCU-----UUG-AGGCGCaGC-----CGGUCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.