Results 21 - 40 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23645 | 3' | -57.6 | NC_005261.1 | + | 7886 | 0.76 | 0.330642 |
Target: 5'- gCGAGcgGCUCUGUucCGGCgCGGCGCCa -3' miRNA: 3'- -GCUCuuUGAGGCGcaGCCG-GUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 76110 | 0.76 | 0.302141 |
Target: 5'- gGAGAAccGCcaCCGCGcCGcGCCGGCGCCc -3' miRNA: 3'- gCUCUU--UGa-GGCGCaGC-CGGUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 103345 | 0.75 | 0.388436 |
Target: 5'- cCGGuacAGCUCCGCGcgccgcucccccagcUCGGCCGcGCGCCg -3' miRNA: 3'- -GCUcu-UUGAGGCGC---------------AGCCGGU-CGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 29390 | 0.75 | 0.385146 |
Target: 5'- cCGAGA---UCCGCGaggCGGCCGcGCGCUa -3' miRNA: 3'- -GCUCUuugAGGCGCa--GCCGGU-CGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 52960 | 0.75 | 0.377005 |
Target: 5'- gGAGcAGCgCCGCGcCGGUgCGGCGCCg -3' miRNA: 3'- gCUCuUUGaGGCGCaGCCG-GUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 106959 | 0.75 | 0.368981 |
Target: 5'- cCGGGcgcGCUCCGCcUCGGCgCGcGCGCCg -3' miRNA: 3'- -GCUCuu-UGAGGCGcAGCCG-GU-CGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 130578 | 0.75 | 0.368981 |
Target: 5'- -cGGAAGCgccgCCGCG-CGGCCccGCGCCu -3' miRNA: 3'- gcUCUUUGa---GGCGCaGCCGGu-CGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 72463 | 0.75 | 0.361074 |
Target: 5'- gCGAGcgcGGCgagCGCGagcgCGGCCAGCGCCa -3' miRNA: 3'- -GCUCu--UUGag-GCGCa---GCCGGUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 14017 | 0.75 | 0.353286 |
Target: 5'- uCGGuGAGCUCUGCGaUGGCCAGCgggGCCa -3' miRNA: 3'- -GCUcUUUGAGGCGCaGCCGGUCG---CGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 39792 | 0.75 | 0.353286 |
Target: 5'- cCGGGggGCggCGCGgccGCCGGCGCCa -3' miRNA: 3'- -GCUCuuUGagGCGCagcCGGUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 66699 | 0.74 | 0.427553 |
Target: 5'- uCGAGAAGg-CCGCGcUCaGCgAGCGCCg -3' miRNA: 3'- -GCUCUUUgaGGCGC-AGcCGgUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 116665 | 0.74 | 0.418851 |
Target: 5'- cCGAccuGCUCCGCGgcgcCGGCCcaaucgcgAGCGCCu -3' miRNA: 3'- -GCUcuuUGAGGCGCa---GCCGG--------UCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 2786 | 0.74 | 0.401774 |
Target: 5'- cCGAGggGCUgCCGCcggCGGCCgggaGGgGCCg -3' miRNA: 3'- -GCUCuuUGA-GGCGca-GCCGG----UCgCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 1153 | 0.74 | 0.401774 |
Target: 5'- gGAGAGcACUUccacgCGCGcCGGCCcGCGCCg -3' miRNA: 3'- gCUCUU-UGAG-----GCGCaGCCGGuCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 121652 | 0.74 | 0.393404 |
Target: 5'- gCGAGcgcGGGCugUCCGCGUCGGCguagguguaGGCGCCc -3' miRNA: 3'- -GCUC---UUUG--AGGCGCAGCCGg--------UCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 109792 | 0.74 | 0.393404 |
Target: 5'- -cGGccGCUgCUGCGaCGGCCGGCGCCg -3' miRNA: 3'- gcUCuuUGA-GGCGCaGCCGGUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 90779 | 0.73 | 0.436361 |
Target: 5'- --cGAGGCcgCUGCGgCGGCCGGCGCg -3' miRNA: 3'- gcuCUUUGa-GGCGCaGCCGGUCGCGg -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 101139 | 0.73 | 0.436361 |
Target: 5'- gCGcGAGGCUgCCGCG-CGGCgGcGCGCCg -3' miRNA: 3'- -GCuCUUUGA-GGCGCaGCCGgU-CGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 14230 | 0.73 | 0.436361 |
Target: 5'- gCGGuGAAgaCCGCGcCGGCCGGgGCCu -3' miRNA: 3'- -GCUcUUUgaGGCGCaGCCGGUCgCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 58768 | 0.73 | 0.436361 |
Target: 5'- cCGAGAGcgccccCagCGCGcCGGCCAGCGCg -3' miRNA: 3'- -GCUCUUu-----GagGCGCaGCCGGUCGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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