miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 54567 1.13 0.001167
Target:  5'- aCGAGAAACUCCGCGUCGGCCAGCGCCg -3'
miRNA:   3'- -GCUCUUUGAGGCGCAGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 108468 0.86 0.080678
Target:  5'- gCGAGGAuCUCCGCGUCGGCgCGcacgcGCGCCg -3'
miRNA:   3'- -GCUCUUuGAGGCGCAGCCG-GU-----CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 86195 0.85 0.082825
Target:  5'- cCGAGcGGGCUCCGCGUCGGC--GCGCCg -3'
miRNA:   3'- -GCUC-UUUGAGGCGCAGCCGguCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 57395 0.83 0.122291
Target:  5'- uCGGGGAGCgcgcCCGUGauccgCGGCCGGCGCCg -3'
miRNA:   3'- -GCUCUUUGa---GGCGCa----GCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 36796 0.82 0.132051
Target:  5'- --cGAGACUuuGCGcCGGCCGGCGCUa -3'
miRNA:   3'- gcuCUUUGAggCGCaGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 15789 0.81 0.165781
Target:  5'- gCGGGcgccGC-CCGCG-CGGCCAGCGCCg -3'
miRNA:   3'- -GCUCuu--UGaGGCGCaGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 66191 0.8 0.187705
Target:  5'- aCGuccgcCUCCGaGUCGGCCAGCGCCa -3'
miRNA:   3'- -GCucuuuGAGGCgCAGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 62409 0.8 0.187705
Target:  5'- aGAGcAGCUCCGCGcccgccgaGGCCAGCGCg -3'
miRNA:   3'- gCUCuUUGAGGCGCag------CCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 97057 0.8 0.197168
Target:  5'- gCGGGggGCggcgggcacgaUCCGCGUCGGa-GGCGCCg -3'
miRNA:   3'- -GCUCuuUG-----------AGGCGCAGCCggUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 39453 0.79 0.207045
Target:  5'- cCGAGc--CUCCGCG-CGGCgCGGCGCCc -3'
miRNA:   3'- -GCUCuuuGAGGCGCaGCCG-GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 82325 0.79 0.207045
Target:  5'- uCGAGAGccGCUCCGCGUagcgcuGCCGGCGCa -3'
miRNA:   3'- -GCUCUU--UGAGGCGCAgc----CGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 72977 0.79 0.22266
Target:  5'- cCGcGggGgUCCGCGagcgCGGCCAGCGCg -3'
miRNA:   3'- -GCuCuuUgAGGCGCa---GCCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 50474 0.78 0.228083
Target:  5'- aCGAGGAcgcucGCgUCCGCGgCGGCCcccAGCGCCu -3'
miRNA:   3'- -GCUCUU-----UG-AGGCGCaGCCGG---UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 2425 0.78 0.233618
Target:  5'- -cGGcgGCgggCCGCGaucUCGGCCAGCGCCu -3'
miRNA:   3'- gcUCuuUGa--GGCGC---AGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 49290 0.78 0.245027
Target:  5'- gCGcAGAAGC-CCGCGgCGGUgAGCGCCg -3'
miRNA:   3'- -GC-UCUUUGaGGCGCaGCCGgUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 19520 0.78 0.256894
Target:  5'- gCGAGGccccgcagcacGGC-CCGCGUCaccGCCAGCGCCg -3'
miRNA:   3'- -GCUCU-----------UUGaGGCGCAGc--CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 50816 0.77 0.263002
Target:  5'- uGAcGGGCUCCGCG-CGGCuUGGCGCCg -3'
miRNA:   3'- gCUcUUUGAGGCGCaGCCG-GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 23423 0.77 0.282033
Target:  5'- gCGAGgcGCUgCGCGUCGG--GGCGCCa -3'
miRNA:   3'- -GCUCuuUGAgGCGCAGCCggUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 76110 0.76 0.302141
Target:  5'- gGAGAAccGCcaCCGCGcCGcGCCGGCGCCc -3'
miRNA:   3'- gCUCUU--UGa-GGCGCaGC-CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 83052 0.76 0.330642
Target:  5'- gCGGGAGgggGCUCCcugcgcgcccccGCGgCGGCCGGCGCUu -3'
miRNA:   3'- -GCUCUU---UGAGG------------CGCaGCCGGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.