miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 83052 0.76 0.330642
Target:  5'- gCGGGAGgggGCUCCcugcgcgcccccGCGgCGGCCGGCGCUu -3'
miRNA:   3'- -GCUCUU---UGAGG------------CGCaGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 7886 0.76 0.330642
Target:  5'- gCGAGcgGCUCUGUucCGGCgCGGCGCCa -3'
miRNA:   3'- -GCUCuuUGAGGCGcaGCCG-GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 39792 0.75 0.353286
Target:  5'- cCGGGggGCggCGCGgccGCCGGCGCCa -3'
miRNA:   3'- -GCUCuuUGagGCGCagcCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 14017 0.75 0.353286
Target:  5'- uCGGuGAGCUCUGCGaUGGCCAGCgggGCCa -3'
miRNA:   3'- -GCUcUUUGAGGCGCaGCCGGUCG---CGG- -5'
23645 3' -57.6 NC_005261.1 + 72463 0.75 0.361074
Target:  5'- gCGAGcgcGGCgagCGCGagcgCGGCCAGCGCCa -3'
miRNA:   3'- -GCUCu--UUGag-GCGCa---GCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 106959 0.75 0.368981
Target:  5'- cCGGGcgcGCUCCGCcUCGGCgCGcGCGCCg -3'
miRNA:   3'- -GCUCuu-UGAGGCGcAGCCG-GU-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 130578 0.75 0.368981
Target:  5'- -cGGAAGCgccgCCGCG-CGGCCccGCGCCu -3'
miRNA:   3'- gcUCUUUGa---GGCGCaGCCGGu-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 52960 0.75 0.377005
Target:  5'- gGAGcAGCgCCGCGcCGGUgCGGCGCCg -3'
miRNA:   3'- gCUCuUUGaGGCGCaGCCG-GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 29390 0.75 0.385146
Target:  5'- cCGAGA---UCCGCGaggCGGCCGcGCGCUa -3'
miRNA:   3'- -GCUCUuugAGGCGCa--GCCGGU-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 103345 0.75 0.388436
Target:  5'- cCGGuacAGCUCCGCGcgccgcucccccagcUCGGCCGcGCGCCg -3'
miRNA:   3'- -GCUcu-UUGAGGCGC---------------AGCCGGU-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 121652 0.74 0.393404
Target:  5'- gCGAGcgcGGGCugUCCGCGUCGGCguagguguaGGCGCCc -3'
miRNA:   3'- -GCUC---UUUG--AGGCGCAGCCGg--------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 109792 0.74 0.393404
Target:  5'- -cGGccGCUgCUGCGaCGGCCGGCGCCg -3'
miRNA:   3'- gcUCuuUGA-GGCGCaGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 1153 0.74 0.401774
Target:  5'- gGAGAGcACUUccacgCGCGcCGGCCcGCGCCg -3'
miRNA:   3'- gCUCUU-UGAG-----GCGCaGCCGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 2786 0.74 0.401774
Target:  5'- cCGAGggGCUgCCGCcggCGGCCgggaGGgGCCg -3'
miRNA:   3'- -GCUCuuUGA-GGCGca-GCCGG----UCgCGG- -5'
23645 3' -57.6 NC_005261.1 + 116665 0.74 0.418851
Target:  5'- cCGAccuGCUCCGCGgcgcCGGCCcaaucgcgAGCGCCu -3'
miRNA:   3'- -GCUcuuUGAGGCGCa---GCCGG--------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 66699 0.74 0.427553
Target:  5'- uCGAGAAGg-CCGCGcUCaGCgAGCGCCg -3'
miRNA:   3'- -GCUCUUUgaGGCGC-AGcCGgUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 14230 0.73 0.436361
Target:  5'- gCGGuGAAgaCCGCGcCGGCCGGgGCCu -3'
miRNA:   3'- -GCUcUUUgaGGCGCaGCCGGUCgCGG- -5'
23645 3' -57.6 NC_005261.1 + 101139 0.73 0.436361
Target:  5'- gCGcGAGGCUgCCGCG-CGGCgGcGCGCCg -3'
miRNA:   3'- -GCuCUUUGA-GGCGCaGCCGgU-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 90779 0.73 0.436361
Target:  5'- --cGAGGCcgCUGCGgCGGCCGGCGCg -3'
miRNA:   3'- gcuCUUUGa-GGCGCaGCCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 58768 0.73 0.436361
Target:  5'- cCGAGAGcgccccCagCGCGcCGGCCAGCGCg -3'
miRNA:   3'- -GCUCUUu-----GagGCGCaGCCGGUCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.