miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 59471 0.73 0.436361
Target:  5'- uCGGGggGCagcgCCgGCG-CGGCCGccGCGCCa -3'
miRNA:   3'- -GCUCuuUGa---GG-CGCaGCCGGU--CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 79412 0.73 0.454285
Target:  5'- uCGAGcAGGC-CCGUGUCGGCgagcuCGGCGCg -3'
miRNA:   3'- -GCUC-UUUGaGGCGCAGCCG-----GUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 135678 0.73 0.454285
Target:  5'- uCGAGGAGCUCUGCGccgcgcggCGGCUAagccuCGCCa -3'
miRNA:   3'- -GCUCUUUGAGGCGCa-------GCCGGUc----GCGG- -5'
23645 3' -57.6 NC_005261.1 + 133823 0.73 0.455191
Target:  5'- aCGAGgcGCUgCGCGgccgcgugcgcgccgUGGCCGGCGCg -3'
miRNA:   3'- -GCUCuuUGAgGCGCa--------------GCCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 118600 0.73 0.472601
Target:  5'- cCGcGGAGCUCgCGCuGUCGGCCGuUGCCc -3'
miRNA:   3'- -GCuCUUUGAG-GCG-CAGCCGGUcGCGG- -5'
23645 3' -57.6 NC_005261.1 + 105264 0.73 0.472601
Target:  5'- gCGAcAGGCUCgGCGggCGG-CAGCGCCg -3'
miRNA:   3'- -GCUcUUUGAGgCGCa-GCCgGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 99471 0.73 0.472601
Target:  5'- gCGGcGgcGCUggCCGCuG-CGGCCAGCGCCg -3'
miRNA:   3'- -GCU-CuuUGA--GGCG-CaGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 12434 0.73 0.481897
Target:  5'- gGAG-GGCUugCgGCGUCGGCCgcgucGGCGCCc -3'
miRNA:   3'- gCUCuUUGA--GgCGCAGCCGG-----UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 104137 0.73 0.481897
Target:  5'- gCGAGcucggCCGCcagGUCGGCCAccGCGCCg -3'
miRNA:   3'- -GCUCuuugaGGCG---CAGCCGGU--CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 124926 0.73 0.481897
Target:  5'- cCGcGGAGGCUCCGCcgcgCGcgcuguGCCGGCGCCc -3'
miRNA:   3'- -GC-UCUUUGAGGCGca--GC------CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 106990 0.73 0.481897
Target:  5'- -----cGCaCCGCGUCGGCCAGgucCGCCg -3'
miRNA:   3'- gcucuuUGaGGCGCAGCCGGUC---GCGG- -5'
23645 3' -57.6 NC_005261.1 + 40665 0.72 0.491282
Target:  5'- -cAGcAGCUCCGCGaCGccgucggggaGCCGGCGCCg -3'
miRNA:   3'- gcUCuUUGAGGCGCaGC----------CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 66341 0.72 0.491282
Target:  5'- aCGAGG---UCUGCGaucUUGGCCAGCGCg -3'
miRNA:   3'- -GCUCUuugAGGCGC---AGCCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 138115 0.72 0.50075
Target:  5'- cCGGGAcgggGACgggggCCGCGaCGGCCGGCGg- -3'
miRNA:   3'- -GCUCU----UUGa----GGCGCaGCCGGUCGCgg -5'
23645 3' -57.6 NC_005261.1 + 48036 0.72 0.50075
Target:  5'- gCGAGGAGCacgCgCGCG-CGGUCGGgGCCc -3'
miRNA:   3'- -GCUCUUUGa--G-GCGCaGCCGGUCgCGG- -5'
23645 3' -57.6 NC_005261.1 + 46320 0.72 0.50075
Target:  5'- cCGcGAGGCUgCGC-UUGGCCAuGCGCCc -3'
miRNA:   3'- -GCuCUUUGAgGCGcAGCCGGU-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 444 0.72 0.50075
Target:  5'- cCGGGAcgggGACgggggCCGCGaCGGCCGGCGg- -3'
miRNA:   3'- -GCUCU----UUGa----GGCGCaGCCGGUCGCgg -5'
23645 3' -57.6 NC_005261.1 + 32092 0.72 0.50075
Target:  5'- gGGGAgccgGACUUCGCGgagggcgaggCGGCCAgccaccGCGCCg -3'
miRNA:   3'- gCUCU----UUGAGGCGCa---------GCCGGU------CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 107134 0.72 0.510298
Target:  5'- gCGAcGgcGCccacggCCGCGgccauggaggCGGCCAGCGCCu -3'
miRNA:   3'- -GCU-CuuUGa-----GGCGCa---------GCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 106545 0.72 0.510298
Target:  5'- -cGGcgGCggCCGCGUCcgGGCCGGCGCg -3'
miRNA:   3'- gcUCuuUGa-GGCGCAG--CCGGUCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.