miRNA display CGI


Results 61 - 80 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 33146 0.72 0.510298
Target:  5'- gGAGGAGCguagugucaCCGCGcggCGGCCgAGcCGCCg -3'
miRNA:   3'- gCUCUUUGa--------GGCGCa--GCCGG-UC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 86582 0.72 0.526699
Target:  5'- -uGGAAGCcggcggcggcgccgUCCuugGCGUCGGCC-GCGCCg -3'
miRNA:   3'- gcUCUUUG--------------AGG---CGCAGCCGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 75630 0.72 0.529614
Target:  5'- aCGuGGacGACguccaCCGCG-CGGCCGGCGCg -3'
miRNA:   3'- -GCuCU--UUGa----GGCGCaGCCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 70105 0.72 0.529614
Target:  5'- gCGAGAAGCUCgGCGccUCGuGCCcGGCaaagGCCa -3'
miRNA:   3'- -GCUCUUUGAGgCGC--AGC-CGG-UCG----CGG- -5'
23645 3' -57.6 NC_005261.1 + 5811 0.72 0.529614
Target:  5'- -aGGAAGCUCggcaGCGgCGGCCGaugcGCGCCg -3'
miRNA:   3'- gcUCUUUGAGg---CGCaGCCGGU----CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 34919 0.72 0.529614
Target:  5'- uCGGGgcGCggccaCGCGgggggCGGCCGGCGCg -3'
miRNA:   3'- -GCUCuuUGag---GCGCa----GCCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 30702 0.72 0.529614
Target:  5'- gGGGAGGC-CCGCGggaGCCccGGCGCCg -3'
miRNA:   3'- gCUCUUUGaGGCGCagcCGG--UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 14974 0.72 0.529614
Target:  5'- gGGGcGACUgcgcggCCGCGcCGGCC-GCGCCc -3'
miRNA:   3'- gCUCuUUGA------GGCGCaGCCGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 5429 0.72 0.529614
Target:  5'- gGAGAcGACcgcggCCGCGgcggCGGCaaCAGCGCCc -3'
miRNA:   3'- gCUCU-UUGa----GGCGCa---GCCG--GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 44182 0.72 0.529614
Target:  5'- cCGAcAAGCUCCGCGcCaGCgAGCGCg -3'
miRNA:   3'- -GCUcUUUGAGGCGCaGcCGgUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 90478 0.72 0.53351
Target:  5'- gCGAGAGccugcucagcgugcuGCUCCGCGacuggcUGGCCAuGCGCa -3'
miRNA:   3'- -GCUCUU---------------UGAGGCGCa-----GCCGGU-CGCGg -5'
23645 3' -57.6 NC_005261.1 + 2680 0.72 0.538394
Target:  5'- gGGGAcccGGCggCGCGccggcuuUUGGCCGGCGCCg -3'
miRNA:   3'- gCUCU---UUGagGCGC-------AGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 2981 0.72 0.539373
Target:  5'- uGAGGcuggGGCUCgGCcuggCGGcCCGGCGCCg -3'
miRNA:   3'- gCUCU----UUGAGgCGca--GCC-GGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 75844 0.72 0.539373
Target:  5'- gGAGggGCgcgcggcgCCGaCGgCGGCCccgacGGCGCCg -3'
miRNA:   3'- gCUCuuUGa-------GGC-GCaGCCGG-----UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 97752 0.72 0.539373
Target:  5'- gCGGGGcgGGCUCgGCGgcgCGGCCGGCaucgacucccgaGCCc -3'
miRNA:   3'- -GCUCU--UUGAGgCGCa--GCCGGUCG------------CGG- -5'
23645 3' -57.6 NC_005261.1 + 117621 0.72 0.539373
Target:  5'- aCGAcgGAAGCgaCCGCGcCgGGCCcGCGCCg -3'
miRNA:   3'- -GCU--CUUUGa-GGCGCaG-CCGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 72825 0.71 0.549192
Target:  5'- uCGAGGg---CCGCaaggcgGUCGGCCAggGCGCCa -3'
miRNA:   3'- -GCUCUuugaGGCG------CAGCCGGU--CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 84400 0.71 0.549192
Target:  5'- uCGAGcuccAGCUCgCGCagcauGUCGGCC-GCGCCc -3'
miRNA:   3'- -GCUCu---UUGAG-GCG-----CAGCCGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 4937 0.71 0.549192
Target:  5'- gCGAGc-GC-CCGCGccgCGGCCcaGGCGCCc -3'
miRNA:   3'- -GCUCuuUGaGGCGCa--GCCGG--UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 44642 0.71 0.558076
Target:  5'- gGAGGAGCUCUGCGg-GGCgGuguuuaaaaaaacGCGCCu -3'
miRNA:   3'- gCUCUUUGAGGCGCagCCGgU-------------CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.