miRNA display CGI


Results 21 - 40 of 341 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 50139 0.66 0.85277
Target:  5'- ---cAAGCUgUGCGUUGGCCGucGCGUCc -3'
miRNA:   3'- gcucUUUGAgGCGCAGCCGGU--CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 77034 0.66 0.85277
Target:  5'- cCGAGGccgcgcgcgcGGCccucggcgaCCGCGcCuGGCCGGUGCCg -3'
miRNA:   3'- -GCUCU----------UUGa--------GGCGCaG-CCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 62840 0.66 0.85277
Target:  5'- gCGGGGGACUggcgcgccCCGCGccacgcggCGGCCuuuuauGCGCg -3'
miRNA:   3'- -GCUCUUUGA--------GGCGCa-------GCCGGu-----CGCGg -5'
23645 3' -57.6 NC_005261.1 + 62210 0.66 0.85277
Target:  5'- gCGAGGG--UgCGCG-CGGCCGcgucuGCGCCc -3'
miRNA:   3'- -GCUCUUugAgGCGCaGCCGGU-----CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 69959 0.66 0.85277
Target:  5'- gGAGggGcCUCCGgGcgCGcGCUAGaaCGCCg -3'
miRNA:   3'- gCUCuuU-GAGGCgCa-GC-CGGUC--GCGG- -5'
23645 3' -57.6 NC_005261.1 + 137775 0.66 0.85277
Target:  5'- gCGGGGcgcgcccccgGGCcCCGCcgccCGcGCCGGCGCCg -3'
miRNA:   3'- -GCUCU----------UUGaGGCGca--GC-CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 117910 0.66 0.85277
Target:  5'- uGAGcgGCUgCGCGggaacgaaGGCCGGCugcgGCCc -3'
miRNA:   3'- gCUCuuUGAgGCGCag------CCGGUCG----CGG- -5'
23645 3' -57.6 NC_005261.1 + 132636 0.66 0.85277
Target:  5'- cCGAGGAcGCgggCGCGgCGGCCcuAGCgGCCg -3'
miRNA:   3'- -GCUCUU-UGag-GCGCaGCCGG--UCG-CGG- -5'
23645 3' -57.6 NC_005261.1 + 22717 0.66 0.85277
Target:  5'- uCGAGGAGC-CgGa---GGaCCAGCGCCa -3'
miRNA:   3'- -GCUCUUUGaGgCgcagCC-GGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 103086 0.66 0.85277
Target:  5'- cCGcGAAGg-CCGgGcccagccCGGCCAGCGCCc -3'
miRNA:   3'- -GCuCUUUgaGGCgCa------GCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 55259 0.66 0.85277
Target:  5'- gCGAGGAGgUCUGCGcccccUGGC--GCGCCg -3'
miRNA:   3'- -GCUCUUUgAGGCGCa----GCCGguCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 117381 0.66 0.85277
Target:  5'- -uGGAGGCgcgCUGCuUCGGCgGgGCGCCc -3'
miRNA:   3'- gcUCUUUGa--GGCGcAGCCGgU-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 13421 0.66 0.848095
Target:  5'- gCGA-AGGCgcacCgCGCGUCgaccgggugcaggcaGGCCGGCGCCu -3'
miRNA:   3'- -GCUcUUUGa---G-GCGCAG---------------CCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 22775 0.66 0.845732
Target:  5'- gGGGGcgGGCcCCGCGagaaggggguugucgCGGCCGGCGgCg -3'
miRNA:   3'- gCUCU--UUGaGGCGCa--------------GCCGGUCGCgG- -5'
23645 3' -57.6 NC_005261.1 + 136766 0.66 0.84494
Target:  5'- uGAGGAGCUCgUGCagcgaGUCGGCgaggCGGUGCa -3'
miRNA:   3'- gCUCUUUGAG-GCG-----CAGCCG----GUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 112065 0.66 0.84494
Target:  5'- uCGGGcguGC-CCuCGUCGGCgagGGCGCCa -3'
miRNA:   3'- -GCUCuu-UGaGGcGCAGCCGg--UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 125708 0.66 0.84494
Target:  5'- cCGGcGAcGGCcgCCGCGggcUCGGCUGGgGCCg -3'
miRNA:   3'- -GCU-CU-UUGa-GGCGC---AGCCGGUCgCGG- -5'
23645 3' -57.6 NC_005261.1 + 59607 0.66 0.84494
Target:  5'- ------cCUCCGCGgcgCGGCggaugAGCGCCa -3'
miRNA:   3'- gcucuuuGAGGCGCa--GCCGg----UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 42231 0.66 0.84494
Target:  5'- ---cGAGCUCCGC--CGcGCgCAGCGCCu -3'
miRNA:   3'- gcucUUUGAGGCGcaGC-CG-GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 67250 0.66 0.84494
Target:  5'- aCGAGGuccgCCGUGUacgccgccagccCGGCCAGCagcaGCCc -3'
miRNA:   3'- -GCUCUuugaGGCGCA------------GCCGGUCG----CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.