miRNA display CGI


Results 61 - 80 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 118558 0.66 0.828725
Target:  5'- gCGAGGAcgccguGC-CCGCGcgcgCGGCgGcgcGCGCCg -3'
miRNA:   3'- -GCUCUU------UGaGGCGCa---GCCGgU---CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 59300 0.66 0.828725
Target:  5'- gCGcAGu-GCcCCGCGucaaaccacUCGGCCAGCGUg -3'
miRNA:   3'- -GC-UCuuUGaGGCGC---------AGCCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 71184 0.66 0.828725
Target:  5'- cCGGGcgcAGCUCgCGgGgcgCGGCCAGCuGCg -3'
miRNA:   3'- -GCUCu--UUGAG-GCgCa--GCCGGUCG-CGg -5'
23645 3' -57.6 NC_005261.1 + 107295 0.66 0.828725
Target:  5'- -cAGgcACUCCGcCG-CGGCCacGGcCGCCg -3'
miRNA:   3'- gcUCuuUGAGGC-GCaGCCGG--UC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 86816 0.66 0.828725
Target:  5'- uCGAucGACacgCCGUGUCGGCCgccaucaccgaGGCcaGCCg -3'
miRNA:   3'- -GCUcuUUGa--GGCGCAGCCGG-----------UCG--CGG- -5'
23645 3' -57.6 NC_005261.1 + 126193 0.66 0.828725
Target:  5'- uCGAccAGCcCCGCG-CGGaCCAGCGgCa -3'
miRNA:   3'- -GCUcuUUGaGGCGCaGCC-GGUCGCgG- -5'
23645 3' -57.6 NC_005261.1 + 59344 0.66 0.828725
Target:  5'- cCGGGucGCcgCCGUcgccacgaggguGUCGcccGCCAGCGCCc -3'
miRNA:   3'- -GCUCuuUGa-GGCG------------CAGC---CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 1814 0.66 0.826232
Target:  5'- cCGGGGuagagCCGCGcguaagCGGCCucggcgcgcgcgaaGGCGCCg -3'
miRNA:   3'- -GCUCUuuga-GGCGCa-----GCCGG--------------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 130822 0.66 0.826232
Target:  5'- uCGAGGGccaggccaccgugcGCUCaaccuugcgcgCGCGccCGGCCGGgCGCCg -3'
miRNA:   3'- -GCUCUU--------------UGAG-----------GCGCa-GCCGGUC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 58878 0.67 0.823723
Target:  5'- uGGGGAGgUCCgggcgggccucgcagGCG-CGcGCCAGCGCg -3'
miRNA:   3'- gCUCUUUgAGG---------------CGCaGC-CGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 75570 0.67 0.820354
Target:  5'- cCGGGgcGCUggGCGgCGGCgCGGCGCUc -3'
miRNA:   3'- -GCUCuuUGAggCGCaGCCG-GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 67307 0.67 0.820354
Target:  5'- -----cGCgcgCCGcCGUCGGCCGcCGCCg -3'
miRNA:   3'- gcucuuUGa--GGC-GCAGCCGGUcGCGG- -5'
23645 3' -57.6 NC_005261.1 + 43775 0.67 0.820354
Target:  5'- uCGuGggGCggCGCG-CGGagGGCGCCg -3'
miRNA:   3'- -GCuCuuUGagGCGCaGCCggUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 98031 0.67 0.820354
Target:  5'- -uGGAGACgCCGCGguacuggCGGCCgcgGGCGgCg -3'
miRNA:   3'- gcUCUUUGaGGCGCa------GCCGG---UCGCgG- -5'
23645 3' -57.6 NC_005261.1 + 104369 0.67 0.820354
Target:  5'- gCGAGAAcagCCGC--CGGCCGGagGCCg -3'
miRNA:   3'- -GCUCUUugaGGCGcaGCCGGUCg-CGG- -5'
23645 3' -57.6 NC_005261.1 + 111801 0.67 0.820354
Target:  5'- aCGccuGGCU-CGCGUCGGCCGagcucGCGCUu -3'
miRNA:   3'- -GCucuUUGAgGCGCAGCCGGU-----CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 69753 0.67 0.820354
Target:  5'- -aGGAGGCgagCGCGggGGgCGGCGCCg -3'
miRNA:   3'- gcUCUUUGag-GCGCagCCgGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 1878 0.67 0.820354
Target:  5'- gCGAGGccAGCaCgGCG-CGcGCCAGCGCg -3'
miRNA:   3'- -GCUCU--UUGaGgCGCaGC-CGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 32273 0.67 0.820354
Target:  5'- cCGAGgcGCcgCCGCuGgugcuggaGGCgGGCGCCg -3'
miRNA:   3'- -GCUCuuUGa-GGCG-Cag------CCGgUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 97375 0.67 0.820354
Target:  5'- cCGGGcGugUcgCCGCG-CGGCUuucGCGCCu -3'
miRNA:   3'- -GCUCuUugA--GGCGCaGCCGGu--CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.