miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 1878 0.67 0.820354
Target:  5'- gCGAGGccAGCaCgGCG-CGcGCCAGCGCg -3'
miRNA:   3'- -GCUCU--UUGaGgCGCaGC-CGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 74937 0.67 0.815251
Target:  5'- aCGGGGAcugcggcgcgggcgcGCUCgGCGcgcucgaGGCCGcGCGCCc -3'
miRNA:   3'- -GCUCUU---------------UGAGgCGCag-----CCGGU-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 45370 0.67 0.815251
Target:  5'- gCGAGGAGCgcgucggggCCGCccuguucgugcagcuGUCGuGCCugcugcGGCGCCu -3'
miRNA:   3'- -GCUCUUUGa--------GGCG---------------CAGC-CGG------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 20846 0.67 0.812677
Target:  5'- gCGGGGgcAGCguggcggcucuugcgCCGCGggcCGGCCAuCGCCa -3'
miRNA:   3'- -GCUCU--UUGa--------------GGCGCa--GCCGGUcGCGG- -5'
23645 3' -57.6 NC_005261.1 + 118110 0.67 0.811816
Target:  5'- gCGcAGAcGCUgCGcCGcCGGCUcGCGCCg -3'
miRNA:   3'- -GC-UCUuUGAgGC-GCaGCCGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 88821 0.67 0.811816
Target:  5'- gCGGGGcGGCggCgCGCGcCGGcCCGGCGUCg -3'
miRNA:   3'- -GCUCU-UUGa-G-GCGCaGCC-GGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 60850 0.67 0.811816
Target:  5'- gCGAGGucGCgcgCCGgGcCGaGCCcGCGCCg -3'
miRNA:   3'- -GCUCUu-UGa--GGCgCaGC-CGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 70786 0.67 0.811816
Target:  5'- gCGAGAAggcguccagcaGCucaaagUCCGCGccggCGGCCccgggcGCGCCg -3'
miRNA:   3'- -GCUCUU-----------UG------AGGCGCa---GCCGGu-----CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 49959 0.67 0.811816
Target:  5'- -aGGAGGCggcgCCGuCGUCauccCCGGCGCCg -3'
miRNA:   3'- gcUCUUUGa---GGC-GCAGcc--GGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 109186 0.67 0.811816
Target:  5'- -uAGcAGCgCCGCGUCgGGCguGCGCa -3'
miRNA:   3'- gcUCuUUGaGGCGCAG-CCGguCGCGg -5'
23645 3' -57.6 NC_005261.1 + 6354 0.67 0.811816
Target:  5'- ----cGGCcUCGCGcCGGuCCGGCGCCg -3'
miRNA:   3'- gcucuUUGaGGCGCaGCC-GGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 66639 0.67 0.811816
Target:  5'- aCGAGAccuGCgUCC-CGUCGGCCgccuccuccgcgAGCaGCCc -3'
miRNA:   3'- -GCUCUu--UG-AGGcGCAGCCGG------------UCG-CGG- -5'
23645 3' -57.6 NC_005261.1 + 73773 0.67 0.811816
Target:  5'- aCGAGGcgcuggccugcGACgugCgCGCGgCGGUCGGCGCg -3'
miRNA:   3'- -GCUCU-----------UUGa--G-GCGCaGCCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 74605 0.67 0.811816
Target:  5'- aCGAGcgGAACUucaUCGCGcCGGCCuucccgcuGCGCUu -3'
miRNA:   3'- -GCUC--UUUGA---GGCGCaGCCGGu-------CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 101438 0.67 0.811816
Target:  5'- cCGAGGcGGCgcggUCCaGCGcUGGCCccAGCGCCg -3'
miRNA:   3'- -GCUCU-UUG----AGG-CGCaGCCGG--UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 43414 0.67 0.811816
Target:  5'- cCGGGGGcggcCUCCGcCGcCGGCggggagcuggcuCGGCGCCu -3'
miRNA:   3'- -GCUCUUu---GAGGC-GCaGCCG------------GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 74492 0.67 0.811816
Target:  5'- gCGGGAu-CUCgGCGcucuUCgGGgCGGCGCCg -3'
miRNA:   3'- -GCUCUuuGAGgCGC----AG-CCgGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 2344 0.67 0.811816
Target:  5'- uCGGGG---UCCGCGaUCugcgacauccaGGCCAcGCGCCg -3'
miRNA:   3'- -GCUCUuugAGGCGC-AG-----------CCGGU-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 96275 0.67 0.810953
Target:  5'- aCGAGGAcgacgcuggcgcgGCUUCgGCcUCGGCCGcGCGCa -3'
miRNA:   3'- -GCUCUU-------------UGAGG-CGcAGCCGGU-CGCGg -5'
23645 3' -57.6 NC_005261.1 + 121806 0.67 0.810953
Target:  5'- aGGGGgcgcguggcugGGCUCUGCGggccgccgCGGCggcgcacCGGCGCCa -3'
miRNA:   3'- gCUCU-----------UUGAGGCGCa-------GCCG-------GUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.