miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 92 0.66 0.85277
Target:  5'- gCGGGGcgcgcccccgGGCcCCGCcgccCGcGCCGGCGCCg -3'
miRNA:   3'- -GCUCU----------UUGaGGCGca--GC-CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 444 0.72 0.50075
Target:  5'- cCGGGAcgggGACgggggCCGCGaCGGCCGGCGg- -3'
miRNA:   3'- -GCUCU----UUGa----GGCGCaGCCGGUCGCgg -5'
23645 3' -57.6 NC_005261.1 + 630 0.68 0.719107
Target:  5'- aGGGGAugUggCgGCGgccGCCAGCGCCg -3'
miRNA:   3'- gCUCUUugA--GgCGCagcCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 1153 0.74 0.401774
Target:  5'- gGAGAGcACUUccacgCGCGcCGGCCcGCGCCg -3'
miRNA:   3'- gCUCUU-UGAG-----GCGCaGCCGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 1245 0.69 0.699415
Target:  5'- cCGGGAAGCccgagUCCGUGccCGggggugacuguGCCGGCGCCc -3'
miRNA:   3'- -GCUCUUUG-----AGGCGCa-GC-----------CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 1293 0.7 0.649375
Target:  5'- cCGGcGggGCUCC-CGUC-GCCGGCGgCg -3'
miRNA:   3'- -GCU-CuuUGAGGcGCAGcCGGUCGCgG- -5'
23645 3' -57.6 NC_005261.1 + 1329 0.66 0.860405
Target:  5'- cCGGGAcGCcgCCGCGcCGcGCCugcaccAGCGUCu -3'
miRNA:   3'- -GCUCUuUGa-GGCGCaGC-CGG------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 1368 0.71 0.568989
Target:  5'- gCGGGcccuGgUCCGCGUCccaGGCCacgccgGGCGCCg -3'
miRNA:   3'- -GCUCuu--UgAGGCGCAG---CCGG------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 1643 0.68 0.714209
Target:  5'- cCGAGccccagcgccgcGCUCUGCG-CGGCCAuguccuuGCGCCc -3'
miRNA:   3'- -GCUCuu----------UGAGGCGCaGCCGGU-------CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 1814 0.66 0.826232
Target:  5'- cCGGGGuagagCCGCGcguaagCGGCCucggcgcgcgcgaaGGCGCCg -3'
miRNA:   3'- -GCUCUuuga-GGCGCa-----GCCGG--------------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 1878 0.67 0.820354
Target:  5'- gCGAGGccAGCaCgGCG-CGcGCCAGCGCg -3'
miRNA:   3'- -GCUCU--UUGaGgCGCaGC-CGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 2029 0.67 0.794273
Target:  5'- aCGAucAGCcgccgCCGCGccgCGGCCAGcCGCa -3'
miRNA:   3'- -GCUcuUUGa----GGCGCa--GCCGGUC-GCGg -5'
23645 3' -57.6 NC_005261.1 + 2228 0.66 0.85277
Target:  5'- gCGAGAGcCcgCCGCGcaccggCGGCCacucaGGcCGCCg -3'
miRNA:   3'- -GCUCUUuGa-GGCGCa-----GCCGG-----UC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 2344 0.67 0.811816
Target:  5'- uCGGGG---UCCGCGaUCugcgacauccaGGCCAcGCGCCg -3'
miRNA:   3'- -GCUCUuugAGGCGC-AG-----------CCGGU-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 2425 0.78 0.233618
Target:  5'- -cGGcgGCgggCCGCGaucUCGGCCAGCGCCu -3'
miRNA:   3'- gcUCuuUGa--GGCGC---AGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 2509 0.7 0.643328
Target:  5'- gCGAGccGCgCCGCGaccUCGgggcggcaguaggccGCCAGCGCCg -3'
miRNA:   3'- -GCUCuuUGaGGCGC---AGC---------------CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 2680 0.72 0.538394
Target:  5'- gGGGAcccGGCggCGCGccggcuuUUGGCCGGCGCCg -3'
miRNA:   3'- gCUCU---UUGagGCGC-------AGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 2786 0.74 0.401774
Target:  5'- cCGAGggGCUgCCGCcggCGGCCgggaGGgGCCg -3'
miRNA:   3'- -GCUCuuUGA-GGCGca-GCCGG----UCgCGG- -5'
23645 3' -57.6 NC_005261.1 + 2981 0.72 0.539373
Target:  5'- uGAGGcuggGGCUCgGCcuggCGGcCCGGCGCCg -3'
miRNA:   3'- gCUCU----UUGAGgCGca--GCC-GGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 3908 0.69 0.669488
Target:  5'- gCGGGc-GC-CCGCG-CcGCCGGCGCCg -3'
miRNA:   3'- -GCUCuuUGaGGCGCaGcCGGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.