miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 4452 0.69 0.709293
Target:  5'- gCGGGcc-CUCCaGCGgcggCGGCCcgucgcgcGGCGCCg -3'
miRNA:   3'- -GCUCuuuGAGG-CGCa---GCCGG--------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 4644 0.66 0.860405
Target:  5'- cCGAGucccuaaaUCCaGUGUCGGCCgcGGCGgCg -3'
miRNA:   3'- -GCUCuuug----AGG-CGCAGCCGG--UCGCgG- -5'
23645 3' -57.6 NC_005261.1 + 4937 0.71 0.549192
Target:  5'- gCGAGc-GC-CCGCGccgCGGCCcaGGCGCCc -3'
miRNA:   3'- -GCUCuuUGaGGCGCa--GCCGG--UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 5333 0.76 0.330642
Target:  5'- gGAGAGGCg-CGgGUCGGCCAGCcgGCUg -3'
miRNA:   3'- gCUCUUUGagGCgCAGCCGGUCG--CGG- -5'
23645 3' -57.6 NC_005261.1 + 5429 0.72 0.529614
Target:  5'- gGAGAcGACcgcggCCGCGgcggCGGCaaCAGCGCCc -3'
miRNA:   3'- gCUCU-UUGa----GGCGCa---GCCG--GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 5811 0.72 0.529614
Target:  5'- -aGGAAGCUCggcaGCGgCGGCCGaugcGCGCCg -3'
miRNA:   3'- gcUCUUUGAGg---CGCaGCCGGU----CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 6243 0.69 0.689483
Target:  5'- cCGGGGAgggccugcccGCcCCGCGgggCGGCCcGcCGCCa -3'
miRNA:   3'- -GCUCUU----------UGaGGCGCa--GCCGGuC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 6354 0.67 0.811816
Target:  5'- ----cGGCcUCGCGcCGGuCCGGCGCCg -3'
miRNA:   3'- gcucuUUGaGGCGCaGCC-GGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 7886 0.76 0.330642
Target:  5'- gCGAGcgGCUCUGUucCGGCgCGGCGCCa -3'
miRNA:   3'- -GCUCuuUGAGGCGcaGCCG-GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 11922 0.68 0.728849
Target:  5'- cCGGccGGCggCUGCGgCGGCCcGCGCCg -3'
miRNA:   3'- -GCUcuUUGa-GGCGCaGCCGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 12165 0.7 0.629208
Target:  5'- ---cAAGCcCCGCacaGGCCAGCGCCg -3'
miRNA:   3'- gcucUUUGaGGCGcagCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 12323 0.67 0.794273
Target:  5'- cCGGcGGGCg-CGCGcUUGGCCGGCGCg -3'
miRNA:   3'- -GCUcUUUGagGCGC-AGCCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 12434 0.73 0.481897
Target:  5'- gGAG-GGCUugCgGCGUCGGCCgcgucGGCGCCc -3'
miRNA:   3'- gCUCuUUGA--GgCGCAGCCGG-----UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 13421 0.66 0.848095
Target:  5'- gCGA-AGGCgcacCgCGCGUCgaccgggugcaggcaGGCCGGCGCCu -3'
miRNA:   3'- -GCUcUUUGa---G-GCGCAG---------------CCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 13799 0.66 0.828725
Target:  5'- gCGGGG---UCCcaaGCGUCGGCCGGCucgacCCg -3'
miRNA:   3'- -GCUCUuugAGG---CGCAGCCGGUCGc----GG- -5'
23645 3' -57.6 NC_005261.1 + 14017 0.75 0.353286
Target:  5'- uCGGuGAGCUCUGCGaUGGCCAGCgggGCCa -3'
miRNA:   3'- -GCUcUUUGAGGCGCaGCCGGUCG---CGG- -5'
23645 3' -57.6 NC_005261.1 + 14230 0.73 0.436361
Target:  5'- gCGGuGAAgaCCGCGcCGGCCGGgGCCu -3'
miRNA:   3'- -GCUcUUUgaGGCGCaGCCGGUCgCGG- -5'
23645 3' -57.6 NC_005261.1 + 14722 0.66 0.834483
Target:  5'- --cGAGAUUCCaGCGUCacgacgguggcaggGGCgauCGGCGCCg -3'
miRNA:   3'- gcuCUUUGAGG-CGCAG--------------CCG---GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 14974 0.72 0.529614
Target:  5'- gGGGcGACUgcgcggCCGCGcCGGCC-GCGCCc -3'
miRNA:   3'- gCUCuUUGA------GGCGCaGCCGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 15011 0.66 0.860405
Target:  5'- gCGGGAGGaggaGuUGUCGGCgGGUGCCg -3'
miRNA:   3'- -GCUCUUUgaggC-GCAGCCGgUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.