miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 15789 0.81 0.165781
Target:  5'- gCGGGcgccGC-CCGCG-CGGCCAGCGCCg -3'
miRNA:   3'- -GCUCuu--UGaGGCGCaGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 16052 0.7 0.629208
Target:  5'- uGGGcAGCgggcCCGCGcCGaGCCGGCGCg -3'
miRNA:   3'- gCUCuUUGa---GGCGCaGC-CGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 16189 0.67 0.779827
Target:  5'- gCGGGGgugGGCgggggCCGCGugauggccucgaggcUCGGCCAGC-CCu -3'
miRNA:   3'- -GCUCU---UUGa----GGCGC---------------AGCCGGUCGcGG- -5'
23645 3' -57.6 NC_005261.1 + 16237 0.67 0.80312
Target:  5'- uCGGGGcggucGACgUCCGCGcCGgggccGCCGGgGCCg -3'
miRNA:   3'- -GCUCU-----UUG-AGGCGCaGC-----CGGUCgCGG- -5'
23645 3' -57.6 NC_005261.1 + 16670 0.67 0.785285
Target:  5'- gCGAGAgcaugAAgUCCGUGUaGGCgAccGCGCCg -3'
miRNA:   3'- -GCUCU-----UUgAGGCGCAgCCGgU--CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 17838 0.66 0.842555
Target:  5'- gCGAGGcgUUCCGCagggccucguaagagCGGCCGGCcggcagGCCa -3'
miRNA:   3'- -GCUCUuuGAGGCGca-------------GCCGGUCG------CGG- -5'
23645 3' -57.6 NC_005261.1 + 18129 0.68 0.748079
Target:  5'- gGGGAAGCagCCGCa--GGcCCAGuCGCCg -3'
miRNA:   3'- gCUCUUUGa-GGCGcagCC-GGUC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 19138 0.66 0.836923
Target:  5'- -cGGGAACUCCucgGCGcgcaCGGCCAGCcgGCg -3'
miRNA:   3'- gcUCUUUGAGG---CGCa---GCCGGUCG--CGg -5'
23645 3' -57.6 NC_005261.1 + 19395 0.71 0.578956
Target:  5'- aGcGggGCUCgGUGaUCGGCCcguGUGCCg -3'
miRNA:   3'- gCuCuuUGAGgCGC-AGCCGGu--CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 19520 0.78 0.256894
Target:  5'- gCGAGGccccgcagcacGGC-CCGCGUCaccGCCAGCGCCg -3'
miRNA:   3'- -GCUCU-----------UUGaGGCGCAGc--CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 20131 0.71 0.568989
Target:  5'- cCGcAGcgGCUCCGCGagcgcUCaGGCC-GCGCCg -3'
miRNA:   3'- -GC-UCuuUGAGGCGC-----AG-CCGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 20846 0.67 0.812677
Target:  5'- gCGGGGgcAGCguggcggcucuugcgCCGCGggcCGGCCAuCGCCa -3'
miRNA:   3'- -GCUCU--UUGa--------------GGCGCa--GCCGGUcGCGG- -5'
23645 3' -57.6 NC_005261.1 + 21402 0.7 0.60905
Target:  5'- uGAGu-GCguucccgcgCCGCGcCGGCCGGUGCa -3'
miRNA:   3'- gCUCuuUGa--------GGCGCaGCCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 21681 0.67 0.776162
Target:  5'- cCGGcuGggGCUCgagCGCGUCgcgGGCgAGCGCUu -3'
miRNA:   3'- -GCU--CuuUGAG---GCGCAG---CCGgUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 22064 0.69 0.669488
Target:  5'- -cAGggGCUCCgGCGg-GGCUcgagggGGCGCCg -3'
miRNA:   3'- gcUCuuUGAGG-CGCagCCGG------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 22717 0.66 0.85277
Target:  5'- uCGAGGAGC-CgGa---GGaCCAGCGCCa -3'
miRNA:   3'- -GCUCUUUGaGgCgcagCC-GGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 22775 0.66 0.845732
Target:  5'- gGGGGcgGGCcCCGCGagaaggggguugucgCGGCCGGCGgCg -3'
miRNA:   3'- gCUCU--UUGaGGCGCa--------------GCCGGUCGCgG- -5'
23645 3' -57.6 NC_005261.1 + 23423 0.77 0.282033
Target:  5'- gCGAGgcGCUgCGCGUCGG--GGCGCCa -3'
miRNA:   3'- -GCUCuuUGAgGCGCAGCCggUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 24451 0.67 0.80312
Target:  5'- aCGAGGuguGCUCCGCGcUCcuucCCAGCuCCa -3'
miRNA:   3'- -GCUCUu--UGAGGCGC-AGcc--GGUCGcGG- -5'
23645 3' -57.6 NC_005261.1 + 27352 0.68 0.766915
Target:  5'- gGGGGAGCg--GCGcCGGaCCGGCGCg -3'
miRNA:   3'- gCUCUUUGaggCGCaGCC-GGUCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.