miRNA display CGI


Results 61 - 80 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 27730 0.66 0.828725
Target:  5'- gGAGGAGCggagaCGCG-CGGgCAGaggaGCCg -3'
miRNA:   3'- gCUCUUUGag---GCGCaGCCgGUCg---CGG- -5'
23645 3' -57.6 NC_005261.1 + 28715 0.67 0.785285
Target:  5'- cCGGGggGC-CCGgG--GGCCucGGCGCCc -3'
miRNA:   3'- -GCUCuuUGaGGCgCagCCGG--UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 29390 0.75 0.385146
Target:  5'- cCGAGA---UCCGCGaggCGGCCGcGCGCUa -3'
miRNA:   3'- -GCUCUuugAGGCGCa--GCCGGU-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 29840 0.7 0.608043
Target:  5'- cCGAGcuGCgcgCCGUGcUCGccggccgcgcggcGCCGGCGCCg -3'
miRNA:   3'- -GCUCuuUGa--GGCGC-AGC-------------CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 30190 0.68 0.757551
Target:  5'- cCGAGGcGGCcgCCGCGcuggaggCGGCC-GCGCUg -3'
miRNA:   3'- -GCUCU-UUGa-GGCGCa------GCCGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 30702 0.72 0.529614
Target:  5'- gGGGAGGC-CCGCGggaGCCccGGCGCCg -3'
miRNA:   3'- gCUCUUUGaGGCGCagcCGG--UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 30960 0.71 0.597988
Target:  5'- uCGAGGcccgccgcGACggcccgCCGCGgcgcaagcgcaagUCGGCCGGgGCCa -3'
miRNA:   3'- -GCUCU--------UUGa-----GGCGC-------------AGCCGGUCgCGG- -5'
23645 3' -57.6 NC_005261.1 + 31012 0.68 0.728849
Target:  5'- -cAGggGC-CCgGCGcCGGCCAaaagccggcGCGCCg -3'
miRNA:   3'- gcUCuuUGaGG-CGCaGCCGGU---------CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 31311 0.66 0.860405
Target:  5'- gCGcGggGC-CCGCGggcgCGcucgccGCCAGCGCg -3'
miRNA:   3'- -GCuCuuUGaGGCGCa---GC------CGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 31893 0.67 0.776162
Target:  5'- cCGAGGccGCUUaCGCG-CGGCUcuaccccggGGCGCCg -3'
miRNA:   3'- -GCUCUu-UGAG-GCGCaGCCGG---------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 32092 0.72 0.50075
Target:  5'- gGGGAgccgGACUUCGCGgagggcgaggCGGCCAgccaccGCGCCg -3'
miRNA:   3'- gCUCU----UUGAGGCGCa---------GCCGGU------CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 32146 0.69 0.689483
Target:  5'- -uGGggGCUCgGCGcgccgcugCGGCCGGUGUa -3'
miRNA:   3'- gcUCuuUGAGgCGCa-------GCCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 32216 0.68 0.766915
Target:  5'- aCGAGcuGCcggCCGCGgcggUGGCCuucuGCGCg -3'
miRNA:   3'- -GCUCuuUGa--GGCGCa---GCCGGu---CGCGg -5'
23645 3' -57.6 NC_005261.1 + 32273 0.67 0.820354
Target:  5'- cCGAGgcGCcgCCGCuGgugcuggaGGCgGGCGCCg -3'
miRNA:   3'- -GCUCuuUGa-GGCG-Cag------CCGgUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 32429 0.69 0.669488
Target:  5'- -cGGGAGCcCCGC--CGGCCugGGCGCCg -3'
miRNA:   3'- gcUCUUUGaGGCGcaGCCGG--UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 33032 0.7 0.618116
Target:  5'- cCGAugcGGAGCgUCCGCGgagGGCCaggacucGGCGCCg -3'
miRNA:   3'- -GCU---CUUUG-AGGCGCag-CCGG-------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 33146 0.72 0.510298
Target:  5'- gGAGGAGCguagugucaCCGCGcggCGGCCgAGcCGCCg -3'
miRNA:   3'- gCUCUUUGa--------GGCGCa--GCCGG-UC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 34328 0.69 0.669488
Target:  5'- cCGAGggGCcccaaggggCCGgGgCGGCCgacggggccgGGCGCCg -3'
miRNA:   3'- -GCUCuuUGa--------GGCgCaGCCGG----------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 34919 0.72 0.529614
Target:  5'- uCGGGgcGCggccaCGCGgggggCGGCCGGCGCg -3'
miRNA:   3'- -GCUCuuUGag---GCGCa----GCCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 35000 0.71 0.568989
Target:  5'- uCGAcAAACacCUGCGgugCGGCCGGCGUCu -3'
miRNA:   3'- -GCUcUUUGa-GGCGCa--GCCGGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.