miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 138115 0.72 0.50075
Target:  5'- cCGGGAcgggGACgggggCCGCGaCGGCCGGCGg- -3'
miRNA:   3'- -GCUCU----UUGa----GGCGCaGCCGGUCGCgg -5'
23645 3' -57.6 NC_005261.1 + 137775 0.66 0.85277
Target:  5'- gCGGGGcgcgcccccgGGCcCCGCcgccCGcGCCGGCGCCg -3'
miRNA:   3'- -GCUCU----------UUGaGGCGca--GC-CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 136766 0.66 0.84494
Target:  5'- uGAGGAGCUCgUGCagcgaGUCGGCgaggCGGUGCa -3'
miRNA:   3'- gCUCUUUGAG-GCG-----CAGCCG----GUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 135678 0.73 0.454285
Target:  5'- uCGAGGAGCUCUGCGccgcgcggCGGCUAagccuCGCCa -3'
miRNA:   3'- -GCUCUUUGAGGCGCa-------GCCGGUc----GCGG- -5'
23645 3' -57.6 NC_005261.1 + 135111 0.66 0.860405
Target:  5'- gCGAGGcgGACcCCGCGUCucCgCAGCGCg -3'
miRNA:   3'- -GCUCU--UUGaGGCGCAGccG-GUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 133823 0.73 0.455191
Target:  5'- aCGAGgcGCUgCGCGgccgcgugcgcgccgUGGCCGGCGCg -3'
miRNA:   3'- -GCUCuuUGAgGCGCa--------------GCCGGUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 133700 0.66 0.860405
Target:  5'- -uGGGAGCUgCGCGacc-CCGGCGCCg -3'
miRNA:   3'- gcUCUUUGAgGCGCagccGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 132678 0.7 0.60905
Target:  5'- gCGAGGAcaagauggGCuUCCGCGU-GGCCgugcccgucccGGCGCCc -3'
miRNA:   3'- -GCUCUU--------UG-AGGCGCAgCCGG-----------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 132636 0.66 0.85277
Target:  5'- cCGAGGAcGCgggCGCGgCGGCCcuAGCgGCCg -3'
miRNA:   3'- -GCUCUU-UGag-GCGCaGCCGG--UCG-CGG- -5'
23645 3' -57.6 NC_005261.1 + 132469 0.7 0.639294
Target:  5'- ------cCUCCGCGcCGG-CAGCGCCu -3'
miRNA:   3'- gcucuuuGAGGCGCaGCCgGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 131968 0.68 0.766915
Target:  5'- gGuGGAGCUgCCGCG-CGGCCAccagGCCu -3'
miRNA:   3'- gCuCUUUGA-GGCGCaGCCGGUcg--CGG- -5'
23645 3' -57.6 NC_005261.1 + 130822 0.66 0.826232
Target:  5'- uCGAGGGccaggccaccgugcGCUCaaccuugcgcgCGCGccCGGCCGGgCGCCg -3'
miRNA:   3'- -GCUCUU--------------UGAG-----------GCGCa-GCCGGUC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 130578 0.75 0.368981
Target:  5'- -cGGAAGCgccgCCGCG-CGGCCccGCGCCu -3'
miRNA:   3'- gcUCUUUGa---GGCGCaGCCGGu-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 130222 0.69 0.699415
Target:  5'- -cGGAAGa---GCGUCGGCCcgcucaGGCGCCg -3'
miRNA:   3'- gcUCUUUgaggCGCAGCCGG------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 129803 0.67 0.776162
Target:  5'- ------cCUCCGCGcUCGcGCCcGCGCCc -3'
miRNA:   3'- gcucuuuGAGGCGC-AGC-CGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 129679 0.67 0.794273
Target:  5'- -cGGggGCgUCGCGacUCgGGCCGGgGCCg -3'
miRNA:   3'- gcUCuuUGaGGCGC--AG-CCGGUCgCGG- -5'
23645 3' -57.6 NC_005261.1 + 127784 0.7 0.649375
Target:  5'- -cGGcuGCUCgaGCGgcgGGCCGGCGCCg -3'
miRNA:   3'- gcUCuuUGAGg-CGCag-CCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 127709 0.7 0.649375
Target:  5'- gGAGGAGCUgCGCGU-GGCC--UGCCu -3'
miRNA:   3'- gCUCUUUGAgGCGCAgCCGGucGCGG- -5'
23645 3' -57.6 NC_005261.1 + 127531 0.66 0.858135
Target:  5'- gCGAGAcGGCcucgcaaaaaauugUCCgguuguacgcguGCGUCGGCCcgcaccagGGCGCCc -3'
miRNA:   3'- -GCUCU-UUG--------------AGG------------CGCAGCCGG--------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 126905 0.66 0.855848
Target:  5'- gGGGAAGCccagcucggucugcaUCCguuccagcaGCG-CGGCCaggGGCGCCg -3'
miRNA:   3'- gCUCUUUG---------------AGG---------CGCaGCCGG---UCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.