miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 126523 0.71 0.578956
Target:  5'- uGGGcgcccGCgcccgCCGCGccUCGGCCAcGCGCCg -3'
miRNA:   3'- gCUCuu---UGa----GGCGC--AGCCGGU-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 126413 0.66 0.860405
Target:  5'- -aAGAGACUUCGCG-C-GCCGuCGCCa -3'
miRNA:   3'- gcUCUUUGAGGCGCaGcCGGUcGCGG- -5'
23645 3' -57.6 NC_005261.1 + 126193 0.66 0.828725
Target:  5'- uCGAccAGCcCCGCG-CGGaCCAGCGgCa -3'
miRNA:   3'- -GCUcuUUGaGGCGCaGCC-GGUCGCgG- -5'
23645 3' -57.6 NC_005261.1 + 125708 0.66 0.84494
Target:  5'- cCGGcGAcGGCcgCCGCGggcUCGGCUGGgGCCg -3'
miRNA:   3'- -GCU-CU-UUGa-GGCGC---AGCCGGUCgCGG- -5'
23645 3' -57.6 NC_005261.1 + 125314 0.71 0.578956
Target:  5'- gCGGGc-GCUCCGCGgccUCGGCguccgCAGCGCg -3'
miRNA:   3'- -GCUCuuUGAGGCGC---AGCCG-----GUCGCGg -5'
23645 3' -57.6 NC_005261.1 + 125124 0.67 0.794273
Target:  5'- uCGGGugguGCgUCUGUGUCcauagcaucGCCGGCGCCg -3'
miRNA:   3'- -GCUCuu--UG-AGGCGCAGc--------CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 124926 0.73 0.481897
Target:  5'- cCGcGGAGGCUCCGCcgcgCGcgcuguGCCGGCGCCc -3'
miRNA:   3'- -GC-UCUUUGAGGCGca--GC------CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 123068 0.66 0.828725
Target:  5'- uCGAuGAGGCcCCGagaGgCGGCCGGCcacGCCa -3'
miRNA:   3'- -GCU-CUUUGaGGCg--CaGCCGGUCG---CGG- -5'
23645 3' -57.6 NC_005261.1 + 121806 0.67 0.810953
Target:  5'- aGGGGgcgcguggcugGGCUCUGCGggccgccgCGGCggcgcacCGGCGCCa -3'
miRNA:   3'- gCUCU-----------UUGAGGCGCa-------GCCG-------GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 121652 0.74 0.393404
Target:  5'- gCGAGcgcGGGCugUCCGCGUCGGCguagguguaGGCGCCc -3'
miRNA:   3'- -GCUC---UUUG--AGGCGCAGCCGg--------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 121380 0.66 0.860405
Target:  5'- -cAGgcGCcCCGCGgCGG-CGGCGCCu -3'
miRNA:   3'- gcUCuuUGaGGCGCaGCCgGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 120619 0.68 0.748079
Target:  5'- cCGuGggGCUCCuGCuGguggCGGCCcuGUGCCu -3'
miRNA:   3'- -GCuCuuUGAGG-CG-Ca---GCCGGu-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 118902 0.67 0.794273
Target:  5'- -uGGugGC-CUGCGUCugGGuCCGGCGCCg -3'
miRNA:   3'- gcUCuuUGaGGCGCAG--CC-GGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 118600 0.73 0.472601
Target:  5'- cCGcGGAGCUCgCGCuGUCGGCCGuUGCCc -3'
miRNA:   3'- -GCuCUUUGAG-GCG-CAGCCGGUcGCGG- -5'
23645 3' -57.6 NC_005261.1 + 118558 0.66 0.828725
Target:  5'- gCGAGGAcgccguGC-CCGCGcgcgCGGCgGcgcGCGCCg -3'
miRNA:   3'- -GCUCUU------UGaGGCGCa---GCCGgU---CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 118345 0.69 0.669488
Target:  5'- gCGGGcuGCUCCuCGgccucUCGGCCGgGCGCUg -3'
miRNA:   3'- -GCUCuuUGAGGcGC-----AGCCGGU-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 118219 0.68 0.748079
Target:  5'- gCGGGGcgcuGACggCCGCGgccgCGGCCuaCGCCg -3'
miRNA:   3'- -GCUCU----UUGa-GGCGCa---GCCGGucGCGG- -5'
23645 3' -57.6 NC_005261.1 + 118110 0.67 0.811816
Target:  5'- gCGcAGAcGCUgCGcCGcCGGCUcGCGCCg -3'
miRNA:   3'- -GC-UCUuUGAgGC-GCaGCCGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 117910 0.66 0.85277
Target:  5'- uGAGcgGCUgCGCGggaacgaaGGCCGGCugcgGCCc -3'
miRNA:   3'- gCUCuuUGAgGCGCag------CCGGUCG----CGG- -5'
23645 3' -57.6 NC_005261.1 + 117828 0.68 0.747127
Target:  5'- aGAGAgccgauaaaagacGAUUCCGCGUCGcGUC-GCGUUa -3'
miRNA:   3'- gCUCU-------------UUGAGGCGCAGC-CGGuCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.