miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 117621 0.72 0.539373
Target:  5'- aCGAcgGAAGCgaCCGCGcCgGGCCcGCGCCg -3'
miRNA:   3'- -GCU--CUUUGa-GGCGCaG-CCGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 117381 0.66 0.85277
Target:  5'- -uGGAGGCgcgCUGCuUCGGCgGgGCGCCc -3'
miRNA:   3'- gcUCUUUGa--GGCGcAGCCGgU-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 116665 0.74 0.418851
Target:  5'- cCGAccuGCUCCGCGgcgcCGGCCcaaucgcgAGCGCCu -3'
miRNA:   3'- -GCUcuuUGAGGCGCa---GCCGG--------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 113165 0.67 0.785285
Target:  5'- cCGAGcgccuGCUCCuggcCGUCauGGCCaccAGCGCCa -3'
miRNA:   3'- -GCUCuu---UGAGGc---GCAG--CCGG---UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 112683 0.71 0.559066
Target:  5'- gCGAGggGCUggGCGUCgaGGCC-GUGCCc -3'
miRNA:   3'- -GCUCuuUGAggCGCAG--CCGGuCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 112065 0.66 0.84494
Target:  5'- uCGGGcguGC-CCuCGUCGGCgagGGCGCCa -3'
miRNA:   3'- -GCUCuu-UGaGGcGCAGCCGg--UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 111801 0.67 0.820354
Target:  5'- aCGccuGGCU-CGCGUCGGCCGagcucGCGCUu -3'
miRNA:   3'- -GCucuUUGAgGCGCAGCCGGU-----CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 110781 0.69 0.669488
Target:  5'- cCGAGAAcguGCUCCGgGggaCGGCgGGCGa- -3'
miRNA:   3'- -GCUCUU---UGAGGCgCa--GCCGgUCGCgg -5'
23645 3' -57.6 NC_005261.1 + 110224 0.66 0.828725
Target:  5'- uCGGcGAcgcCUCCaGCGUgggCGGCgCGGCGCCc -3'
miRNA:   3'- -GCU-CUuu-GAGG-CGCA---GCCG-GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 109875 0.66 0.836923
Target:  5'- aGcGggGC-CCGCG--GGCgGGCGCCc -3'
miRNA:   3'- gCuCuuUGaGGCGCagCCGgUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 109792 0.74 0.393404
Target:  5'- -cGGccGCUgCUGCGaCGGCCGGCGCCg -3'
miRNA:   3'- gcUCuuUGA-GGCGCaGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 109453 0.66 0.85277
Target:  5'- aGAGAGGCaacccCCGCuUCGcGCguGCGCg -3'
miRNA:   3'- gCUCUUUGa----GGCGcAGC-CGguCGCGg -5'
23645 3' -57.6 NC_005261.1 + 109340 0.66 0.836923
Target:  5'- gCGGGGucGGCggCCGCGUCGccguCCAGcCGCUc -3'
miRNA:   3'- -GCUCU--UUGa-GGCGCAGCc---GGUC-GCGG- -5'
23645 3' -57.6 NC_005261.1 + 109186 0.67 0.811816
Target:  5'- -uAGcAGCgCCGCGUCgGGCguGCGCa -3'
miRNA:   3'- gcUCuUUGaGGCGCAG-CCGguCGCGg -5'
23645 3' -57.6 NC_005261.1 + 109035 0.68 0.76131
Target:  5'- cCGuGgcGCgcagCCGCG-CGGCCgccagguagcccagcGGCGCCu -3'
miRNA:   3'- -GCuCuuUGa---GGCGCaGCCGG---------------UCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 108631 0.69 0.709293
Target:  5'- cCGAGucggcaauCUCCGCGaaGGCCucCGCCa -3'
miRNA:   3'- -GCUCuuu-----GAGGCGCagCCGGucGCGG- -5'
23645 3' -57.6 NC_005261.1 + 108528 0.7 0.629208
Target:  5'- aCGaAGggGuCUCgGUa--GGCCAGCGCCg -3'
miRNA:   3'- -GC-UCuuU-GAGgCGcagCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 108468 0.86 0.080678
Target:  5'- gCGAGGAuCUCCGCGUCGGCgCGcacgcGCGCCg -3'
miRNA:   3'- -GCUCUUuGAGGCGCAGCCG-GU-----CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 108330 0.69 0.679505
Target:  5'- gCGu---GCUCCGCGaccCGcGCCAGgGCCg -3'
miRNA:   3'- -GCucuuUGAGGCGCa--GC-CGGUCgCGG- -5'
23645 3' -57.6 NC_005261.1 + 108250 0.69 0.699415
Target:  5'- gCGuGAAcC-CCGcCG-CGGCCAGCGUCu -3'
miRNA:   3'- -GCuCUUuGaGGC-GCaGCCGGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.