Results 1 - 20 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23645 | 3' | -57.6 | NC_005261.1 | + | 48889 | 0.66 | 0.863404 |
Target: 5'- cCGccGAACagCCGCaGUUGGCCucuagcgcgagcccgGGCGCCa -3' miRNA: 3'- -GCucUUUGa-GGCG-CAGCCGG---------------UCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 50474 | 0.78 | 0.228083 |
Target: 5'- aCGAGGAcgcucGCgUCCGCGgCGGCCcccAGCGCCu -3' miRNA: 3'- -GCUCUU-----UG-AGGCGCaGCCGG---UCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 2425 | 0.78 | 0.233618 |
Target: 5'- -cGGcgGCgggCCGCGaucUCGGCCAGCGCCu -3' miRNA: 3'- gcUCuuUGa--GGCGC---AGCCGGUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 49290 | 0.78 | 0.245027 |
Target: 5'- gCGcAGAAGC-CCGCGgCGGUgAGCGCCg -3' miRNA: 3'- -GC-UCUUUGaGGCGCaGCCGgUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 19520 | 0.78 | 0.256894 |
Target: 5'- gCGAGGccccgcagcacGGC-CCGCGUCaccGCCAGCGCCg -3' miRNA: 3'- -GCUCU-----------UUGaGGCGCAGc--CGGUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 50816 | 0.77 | 0.263002 |
Target: 5'- uGAcGGGCUCCGCG-CGGCuUGGCGCCg -3' miRNA: 3'- gCUcUUUGAGGCGCaGCCG-GUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 23423 | 0.77 | 0.282033 |
Target: 5'- gCGAGgcGCUgCGCGUCGG--GGCGCCa -3' miRNA: 3'- -GCUCuuUGAgGCGCAGCCggUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 76110 | 0.76 | 0.302141 |
Target: 5'- gGAGAAccGCcaCCGCGcCGcGCCGGCGCCc -3' miRNA: 3'- gCUCUU--UGa-GGCGCaGC-CGGUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 7886 | 0.76 | 0.330642 |
Target: 5'- gCGAGcgGCUCUGUucCGGCgCGGCGCCa -3' miRNA: 3'- -GCUCuuUGAGGCGcaGCCG-GUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 72977 | 0.79 | 0.22266 |
Target: 5'- cCGcGggGgUCCGCGagcgCGGCCAGCGCg -3' miRNA: 3'- -GCuCuuUgAGGCGCa---GCCGGUCGCGg -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 39453 | 0.79 | 0.207045 |
Target: 5'- cCGAGc--CUCCGCG-CGGCgCGGCGCCc -3' miRNA: 3'- -GCUCuuuGAGGCGCaGCCG-GUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 82325 | 0.79 | 0.207045 |
Target: 5'- uCGAGAGccGCUCCGCGUagcgcuGCCGGCGCa -3' miRNA: 3'- -GCUCUU--UGAGGCGCAgc----CGGUCGCGg -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 108468 | 0.86 | 0.080678 |
Target: 5'- gCGAGGAuCUCCGCGUCGGCgCGcacgcGCGCCg -3' miRNA: 3'- -GCUCUUuGAGGCGCAGCCG-GU-----CGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 86195 | 0.85 | 0.082825 |
Target: 5'- cCGAGcGGGCUCCGCGUCGGC--GCGCCg -3' miRNA: 3'- -GCUC-UUUGAGGCGCAGCCGguCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 57395 | 0.83 | 0.122291 |
Target: 5'- uCGGGGAGCgcgcCCGUGauccgCGGCCGGCGCCg -3' miRNA: 3'- -GCUCUUUGa---GGCGCa----GCCGGUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 36796 | 0.82 | 0.132051 |
Target: 5'- --cGAGACUuuGCGcCGGCCGGCGCUa -3' miRNA: 3'- gcuCUUUGAggCGCaGCCGGUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 15789 | 0.81 | 0.165781 |
Target: 5'- gCGGGcgccGC-CCGCG-CGGCCAGCGCCg -3' miRNA: 3'- -GCUCuu--UGaGGCGCaGCCGGUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 66191 | 0.8 | 0.187705 |
Target: 5'- aCGuccgcCUCCGaGUCGGCCAGCGCCa -3' miRNA: 3'- -GCucuuuGAGGCgCAGCCGGUCGCGG- -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 62409 | 0.8 | 0.187705 |
Target: 5'- aGAGcAGCUCCGCGcccgccgaGGCCAGCGCg -3' miRNA: 3'- gCUCuUUGAGGCGCag------CCGGUCGCGg -5' |
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23645 | 3' | -57.6 | NC_005261.1 | + | 97057 | 0.8 | 0.197168 |
Target: 5'- gCGGGggGCggcgggcacgaUCCGCGUCGGa-GGCGCCg -3' miRNA: 3'- -GCUCuuUG-----------AGGCGCAGCCggUCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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