miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23645 3' -57.6 NC_005261.1 + 15789 0.81 0.165781
Target:  5'- gCGGGcgccGC-CCGCG-CGGCCAGCGCCg -3'
miRNA:   3'- -GCUCuu--UGaGGCGCaGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 36796 0.82 0.132051
Target:  5'- --cGAGACUuuGCGcCGGCCGGCGCUa -3'
miRNA:   3'- gcuCUUUGAggCGCaGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 57395 0.83 0.122291
Target:  5'- uCGGGGAGCgcgcCCGUGauccgCGGCCGGCGCCg -3'
miRNA:   3'- -GCUCUUUGa---GGCGCa----GCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 86195 0.85 0.082825
Target:  5'- cCGAGcGGGCUCCGCGUCGGC--GCGCCg -3'
miRNA:   3'- -GCUC-UUUGAGGCGCAGCCGguCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 108468 0.86 0.080678
Target:  5'- gCGAGGAuCUCCGCGUCGGCgCGcacgcGCGCCg -3'
miRNA:   3'- -GCUCUUuGAGGCGCAGCCG-GU-----CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 49290 0.78 0.245027
Target:  5'- gCGcAGAAGC-CCGCGgCGGUgAGCGCCg -3'
miRNA:   3'- -GC-UCUUUGaGGCGCaGCCGgUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 19520 0.78 0.256894
Target:  5'- gCGAGGccccgcagcacGGC-CCGCGUCaccGCCAGCGCCg -3'
miRNA:   3'- -GCUCU-----------UUGaGGCGCAGc--CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 29390 0.75 0.385146
Target:  5'- cCGAGA---UCCGCGaggCGGCCGcGCGCUa -3'
miRNA:   3'- -GCUCUuugAGGCGCa--GCCGGU-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 52960 0.75 0.377005
Target:  5'- gGAGcAGCgCCGCGcCGGUgCGGCGCCg -3'
miRNA:   3'- gCUCuUUGaGGCGCaGCCG-GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 106959 0.75 0.368981
Target:  5'- cCGGGcgcGCUCCGCcUCGGCgCGcGCGCCg -3'
miRNA:   3'- -GCUCuu-UGAGGCGcAGCCG-GU-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 130578 0.75 0.368981
Target:  5'- -cGGAAGCgccgCCGCG-CGGCCccGCGCCu -3'
miRNA:   3'- gcUCUUUGa---GGCGCaGCCGGu-CGCGG- -5'
23645 3' -57.6 NC_005261.1 + 72463 0.75 0.361074
Target:  5'- gCGAGcgcGGCgagCGCGagcgCGGCCAGCGCCa -3'
miRNA:   3'- -GCUCu--UUGag-GCGCa---GCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 14017 0.75 0.353286
Target:  5'- uCGGuGAGCUCUGCGaUGGCCAGCgggGCCa -3'
miRNA:   3'- -GCUcUUUGAGGCGCaGCCGGUCG---CGG- -5'
23645 3' -57.6 NC_005261.1 + 39792 0.75 0.353286
Target:  5'- cCGGGggGCggCGCGgccGCCGGCGCCa -3'
miRNA:   3'- -GCUCuuUGagGCGCagcCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 5333 0.76 0.330642
Target:  5'- gGAGAGGCg-CGgGUCGGCCAGCcgGCUg -3'
miRNA:   3'- gCUCUUUGagGCgCAGCCGGUCG--CGG- -5'
23645 3' -57.6 NC_005261.1 + 83052 0.76 0.330642
Target:  5'- gCGGGAGgggGCUCCcugcgcgcccccGCGgCGGCCGGCGCUu -3'
miRNA:   3'- -GCUCUU---UGAGG------------CGCaGCCGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 7886 0.76 0.330642
Target:  5'- gCGAGcgGCUCUGUucCGGCgCGGCGCCa -3'
miRNA:   3'- -GCUCuuUGAGGCGcaGCCG-GUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 76110 0.76 0.302141
Target:  5'- gGAGAAccGCcaCCGCGcCGcGCCGGCGCCc -3'
miRNA:   3'- gCUCUU--UGa-GGCGCaGC-CGGUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 23423 0.77 0.282033
Target:  5'- gCGAGgcGCUgCGCGUCGG--GGCGCCa -3'
miRNA:   3'- -GCUCuuUGAgGCGCAGCCggUCGCGG- -5'
23645 3' -57.6 NC_005261.1 + 50816 0.77 0.263002
Target:  5'- uGAcGGGCUCCGCG-CGGCuUGGCGCCg -3'
miRNA:   3'- gCUcUUUGAGGCGCaGCCG-GUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.