miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 22492 0.66 0.687778
Target:  5'- -gCGCGCcCGCgggGGGCCaCGcGGCGUUu -3'
miRNA:   3'- cgGCGCGuGUGa--CCUGGaGC-CCGCAA- -5'
23646 3' -60.9 NC_005261.1 + 4406 0.66 0.687778
Target:  5'- gGCgGCgGCGCGCUGccgggccaGGCCUCgccggaGGGCGUc -3'
miRNA:   3'- -CGgCG-CGUGUGAC--------CUGGAG------CCCGCAa -5'
23646 3' -60.9 NC_005261.1 + 16715 0.66 0.687778
Target:  5'- -gCGCGCGCcgguACUGGcCCUC-GGCGa- -3'
miRNA:   3'- cgGCGCGUG----UGACCuGGAGcCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 42995 0.66 0.687778
Target:  5'- aGCUGgGCuACACcgaGGGCCa-GGGCGUg -3'
miRNA:   3'- -CGGCgCG-UGUGa--CCUGGagCCCGCAa -5'
23646 3' -60.9 NC_005261.1 + 59638 0.66 0.687778
Target:  5'- cUCGCGguCGCUGu-CCUCGaGGCGg- -3'
miRNA:   3'- cGGCGCguGUGACcuGGAGC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 86889 0.66 0.687778
Target:  5'- gGCCGCGC-C-CUGGuCCgcgCGcGGCGc- -3'
miRNA:   3'- -CGGCGCGuGuGACCuGGa--GC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 48667 0.66 0.687778
Target:  5'- aGCCGCGCGgcaacggcgacUAC-GGGCCcgCGGGCc-- -3'
miRNA:   3'- -CGGCGCGU-----------GUGaCCUGGa-GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 47703 0.66 0.687778
Target:  5'- cGCCGCGUcgGCgGCgucggGGGCCUCcucGGCGg- -3'
miRNA:   3'- -CGGCGCG--UG-UGa----CCUGGAGc--CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 94843 0.66 0.687778
Target:  5'- aCgGCGCGC-CUGG-CCUCGGcGCu-- -3'
miRNA:   3'- cGgCGCGUGuGACCuGGAGCC-CGcaa -5'
23646 3' -60.9 NC_005261.1 + 121790 0.66 0.687778
Target:  5'- gGCCG-GCGgGCUGGGCaggGGGCGc- -3'
miRNA:   3'- -CGGCgCGUgUGACCUGgagCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 99866 0.66 0.686788
Target:  5'- cGCCGCGCGCcgccgccGCUcGGCgcgaGGGCGUUg -3'
miRNA:   3'- -CGGCGCGUG-------UGAcCUGgag-CCCGCAA- -5'
23646 3' -60.9 NC_005261.1 + 23733 0.66 0.677861
Target:  5'- gGCCGCGCcgagGCGCguccgGGaggggcgggcuuGCCcCGGGCGg- -3'
miRNA:   3'- -CGGCGCG----UGUGa----CC------------UGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 118273 0.66 0.677861
Target:  5'- aCUGCGCGCACUucgugacGGCCgccgCGGGCa-- -3'
miRNA:   3'- cGGCGCGUGUGAc------CUGGa---GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 92759 0.66 0.677861
Target:  5'- cCCGCGC-CGCUcGGACCgggccgagccCGGGCu-- -3'
miRNA:   3'- cGGCGCGuGUGA-CCUGGa---------GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 55497 0.66 0.677861
Target:  5'- cGCgGCGCGCuCUGGagcaGCCacUGGGCGa- -3'
miRNA:   3'- -CGgCGCGUGuGACC----UGGa-GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 53554 0.66 0.677861
Target:  5'- gGCCGCGCcgcggcccaggcGCACUaGcGGCCgCGGGCc-- -3'
miRNA:   3'- -CGGCGCG------------UGUGA-C-CUGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 105752 0.66 0.667908
Target:  5'- cUCGCGCGCGg-GGACCU-GGGUGc- -3'
miRNA:   3'- cGGCGCGUGUgaCCUGGAgCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 3393 0.66 0.667908
Target:  5'- aGCCGCGCcgGCACUuccGCCggCGGGCu-- -3'
miRNA:   3'- -CGGCGCG--UGUGAcc-UGGa-GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 38168 0.66 0.667908
Target:  5'- gGCCGCaGCACGgcugcCUGGagGCCU-GGGCGc- -3'
miRNA:   3'- -CGGCG-CGUGU-----GACC--UGGAgCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 33365 0.66 0.667908
Target:  5'- cGCCGgGcCGCGCcGGGCUgCGGGCc-- -3'
miRNA:   3'- -CGGCgC-GUGUGaCCUGGaGCCCGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.