miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 73818 0.66 0.637915
Target:  5'- aGCCGCGCcCGCgccuagcccGGcUCUUGGGCGa- -3'
miRNA:   3'- -CGGCGCGuGUGa--------CCuGGAGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 48667 0.66 0.687778
Target:  5'- aGCCGCGCGgcaacggcgacUAC-GGGCCcgCGGGCc-- -3'
miRNA:   3'- -CGGCGCGU-----------GUGaCCUGGa-GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 118379 0.66 0.627899
Target:  5'- gGgCGCGCggcccgagGCGCUGGcgGCCgCGGGCGc- -3'
miRNA:   3'- -CgGCGCG--------UGUGACC--UGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 81201 0.66 0.627899
Target:  5'- gGCCGCGCggGCGCgagccGGACCacCGuGGCGc- -3'
miRNA:   3'- -CGGCGCG--UGUGa----CCUGGa-GC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 76914 0.66 0.627899
Target:  5'- cGCUGUGCGUGCUGGGCCgccgcgUCGGGaccauCGUUa -3'
miRNA:   3'- -CGGCGCGUGUGACCUGG------AGCCC-----GCAA- -5'
23646 3' -60.9 NC_005261.1 + 33607 0.66 0.637915
Target:  5'- cGCCgGCGCGgGCggcgGGGCC-CGGGgGc- -3'
miRNA:   3'- -CGG-CGCGUgUGa---CCUGGaGCCCgCaa -5'
23646 3' -60.9 NC_005261.1 + 102463 0.66 0.627899
Target:  5'- cGgCGCGCAgGCgccGGACCUCcucGGCGc- -3'
miRNA:   3'- -CgGCGCGUgUGa--CCUGGAGc--CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 108768 0.66 0.637915
Target:  5'- cGCCGCGC-CAC-GGcACCaUGGGCa-- -3'
miRNA:   3'- -CGGCGCGuGUGaCC-UGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 97006 0.66 0.637915
Target:  5'- -gCGCGC-CAUUGGgcggGCCgUCGGGCGc- -3'
miRNA:   3'- cgGCGCGuGUGACC----UGG-AGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 9641 0.66 0.647928
Target:  5'- gGCUGgGUGgGCgGGGCCcacUCGGGCGg- -3'
miRNA:   3'- -CGGCgCGUgUGaCCUGG---AGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 51728 0.66 0.627899
Target:  5'- gGUCGUGCGCACgcaGGcCCcCGGGCu-- -3'
miRNA:   3'- -CGGCGCGUGUGa--CCuGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 20541 0.66 0.637915
Target:  5'- aCCGCGCucuGCUGGACgUgGcGGCGg- -3'
miRNA:   3'- cGGCGCGug-UGACCUGgAgC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 117673 0.66 0.637915
Target:  5'- cGCCGCGCccgGCcGGGCC-CGcGGCGa- -3'
miRNA:   3'- -CGGCGCGug-UGaCCUGGaGC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 2671 0.66 0.627899
Target:  5'- cGCCGCGCugG--GGACCcggCGGcGCGc- -3'
miRNA:   3'- -CGGCGCGugUgaCCUGGa--GCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 131693 0.66 0.648928
Target:  5'- -gCGCGCgGCGCUGGACCgccucgagagccaggCGGcGCGc- -3'
miRNA:   3'- cgGCGCG-UGUGACCUGGa--------------GCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 10983 0.66 0.636914
Target:  5'- cCCGCGCccgacugGCGCUGGuCCUCcGGCu-- -3'
miRNA:   3'- cGGCGCG-------UGUGACCuGGAGcCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 36645 0.66 0.637915
Target:  5'- aGCCG-GCGCGC-GGGCUUgGGGCc-- -3'
miRNA:   3'- -CGGCgCGUGUGaCCUGGAgCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 104894 0.66 0.637915
Target:  5'- cGCCGCGUGCGCccGGAcgcCCUCcaGGGCc-- -3'
miRNA:   3'- -CGGCGCGUGUGa-CCU---GGAG--CCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 97897 0.66 0.647928
Target:  5'- gGCCgGCGgACcguCUGGGCgC-CGGGCGUc -3'
miRNA:   3'- -CGG-CGCgUGu--GACCUG-GaGCCCGCAa -5'
23646 3' -60.9 NC_005261.1 + 103891 0.66 0.651929
Target:  5'- gGCgGCGCGCcaaGCcGGGCCacccgcgccgccaggUCGGGCGc- -3'
miRNA:   3'- -CGgCGCGUG---UGaCCUGG---------------AGCCCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.