miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 118379 0.66 0.627899
Target:  5'- gGgCGCGCggcccgagGCGCUGGcgGCCgCGGGCGc- -3'
miRNA:   3'- -CgGCGCG--------UGUGACC--UGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 102463 0.66 0.627899
Target:  5'- cGgCGCGCAgGCgccGGACCUCcucGGCGc- -3'
miRNA:   3'- -CgGCGCGUgUGa--CCUGGAGc--CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 63958 0.66 0.667908
Target:  5'- cCCGUGCGCAgCUGGugCgucagcgccagCGGGCu-- -3'
miRNA:   3'- cGGCGCGUGU-GACCugGa----------GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 55497 0.66 0.677861
Target:  5'- cGCgGCGCGCuCUGGagcaGCCacUGGGCGa- -3'
miRNA:   3'- -CGgCGCGUGuGACC----UGGa-GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 105752 0.66 0.667908
Target:  5'- cUCGCGCGCGg-GGACCU-GGGUGc- -3'
miRNA:   3'- cGGCGCGUGUgaCCUGGAgCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 38168 0.66 0.667908
Target:  5'- gGCCGCaGCACGgcugcCUGGagGCCU-GGGCGc- -3'
miRNA:   3'- -CGGCG-CGUGU-----GACC--UGGAgCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 97077 0.66 0.666911
Target:  5'- uCCGCGUcggaggcGCcgGCUGGGCCggGGGCGc- -3'
miRNA:   3'- cGGCGCG-------UG--UGACCUGGagCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 74266 0.66 0.657928
Target:  5'- uUCGCGCGCGCgcguCCgcggCGGGCGg- -3'
miRNA:   3'- cGGCGCGUGUGaccuGGa---GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 51728 0.66 0.627899
Target:  5'- gGUCGUGCGCACgcaGGcCCcCGGGCu-- -3'
miRNA:   3'- -CGGCGCGUGUGa--CCuGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 23733 0.66 0.677861
Target:  5'- gGCCGCGCcgagGCGCguccgGGaggggcgggcuuGCCcCGGGCGg- -3'
miRNA:   3'- -CGGCGCG----UGUGa----CC------------UGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 131693 0.66 0.648928
Target:  5'- -gCGCGCgGCGCUGGACCgccucgagagccaggCGGcGCGc- -3'
miRNA:   3'- cgGCGCG-UGUGACCUGGa--------------GCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 53554 0.66 0.677861
Target:  5'- gGCCGCGCcgcggcccaggcGCACUaGcGGCCgCGGGCc-- -3'
miRNA:   3'- -CGGCGCG------------UGUGA-C-CUGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 76914 0.66 0.627899
Target:  5'- cGCUGUGCGUGCUGGGCCgccgcgUCGGGaccauCGUUa -3'
miRNA:   3'- -CGGCGCGUGUGACCUGG------AGCCC-----GCAA- -5'
23646 3' -60.9 NC_005261.1 + 103891 0.66 0.651929
Target:  5'- gGCgGCGCGCcaaGCcGGGCCacccgcgccgccaggUCGGGCGc- -3'
miRNA:   3'- -CGgCGCGUG---UGaCCUGG---------------AGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 32271 0.66 0.657928
Target:  5'- cGCCGagGCGCcgccGCUGGugCUggaggCGGGCGc- -3'
miRNA:   3'- -CGGCg-CGUG----UGACCugGA-----GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 96342 0.66 0.666911
Target:  5'- gGCCGCGCGCaccugacgcccugACUGG-CCU-GGcGCGg- -3'
miRNA:   3'- -CGGCGCGUG-------------UGACCuGGAgCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 117673 0.66 0.637915
Target:  5'- cGCCGCGCccgGCcGGGCC-CGcGGCGa- -3'
miRNA:   3'- -CGGCGCGug-UGaCCUGGaGC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 48667 0.66 0.687778
Target:  5'- aGCCGCGCGgcaacggcgacUAC-GGGCCcgCGGGCc-- -3'
miRNA:   3'- -CGGCGCGU-----------GUGaCCUGGa-GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 118273 0.66 0.677861
Target:  5'- aCUGCGCGCACUucgugacGGCCgccgCGGGCa-- -3'
miRNA:   3'- cGGCGCGUGUGAc------CUGGa---GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 33365 0.66 0.667908
Target:  5'- cGCCGgGcCGCGCcGGGCUgCGGGCc-- -3'
miRNA:   3'- -CGGCgC-GUGUGaCCUGGaGCCCGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.