miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 72853 0.66 0.657928
Target:  5'- cGCCaGCGCccAgGCgUGGACCgCGGGCa-- -3'
miRNA:   3'- -CGG-CGCG--UgUG-ACCUGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 131693 0.66 0.648928
Target:  5'- -gCGCGCgGCGCUGGACCgccucgagagccaggCGGcGCGc- -3'
miRNA:   3'- cgGCGCG-UGUGACCUGGa--------------GCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 108768 0.66 0.637915
Target:  5'- cGCCGCGC-CAC-GGcACCaUGGGCa-- -3'
miRNA:   3'- -CGGCGCGuGUGaCC-UGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 102940 0.66 0.666911
Target:  5'- cGCCGcCGC-CGCUGcggcggcGGCCgCGGGCGc- -3'
miRNA:   3'- -CGGC-GCGuGUGAC-------CUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 96306 0.66 0.666911
Target:  5'- gGCCGCGCGCaccugacgcccugACUGG-CCU-GGcGCGg- -3'
miRNA:   3'- -CGGCGCGUG-------------UGACCuGGAgCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 36645 0.66 0.637915
Target:  5'- aGCCG-GCGCGC-GGGCUUgGGGCc-- -3'
miRNA:   3'- -CGGCgCGUGUGaCCUGGAgCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 55497 0.66 0.677861
Target:  5'- cGCgGCGCGCuCUGGagcaGCCacUGGGCGa- -3'
miRNA:   3'- -CGgCGCGUGuGACC----UGGa-GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 97897 0.66 0.647928
Target:  5'- gGCCgGCGgACcguCUGGGCgC-CGGGCGUc -3'
miRNA:   3'- -CGG-CGCgUGu--GACCUG-GaGCCCGCAa -5'
23646 3' -60.9 NC_005261.1 + 29406 0.66 0.657928
Target:  5'- gGCCGCGCGCuacgcggcggccGCgGGGCCcgCGGcCGUg -3'
miRNA:   3'- -CGGCGCGUG------------UGaCCUGGa-GCCcGCAa -5'
23646 3' -60.9 NC_005261.1 + 32271 0.66 0.657928
Target:  5'- cGCCGagGCGCcgccGCUGGugCUggaggCGGGCGc- -3'
miRNA:   3'- -CGGCg-CGUG----UGACCugGA-----GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 33365 0.66 0.667908
Target:  5'- cGCCGgGcCGCGCcGGGCUgCGGGCc-- -3'
miRNA:   3'- -CGGCgC-GUGUGaCCUGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 33607 0.66 0.637915
Target:  5'- cGCCgGCGCGgGCggcgGGGCC-CGGGgGc- -3'
miRNA:   3'- -CGG-CGCGUgUGa---CCUGGaGCCCgCaa -5'
23646 3' -60.9 NC_005261.1 + 133519 0.67 0.578004
Target:  5'- aCCGUGUuCACcgUGGACCUCucgGGGCGc- -3'
miRNA:   3'- cGGCGCGuGUG--ACCUGGAG---CCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 48042 0.67 0.578004
Target:  5'- aGCaCGCGCGCGCggucgGGGCC-CGcGGCc-- -3'
miRNA:   3'- -CG-GCGCGUGUGa----CCUGGaGC-CCGcaa -5'
23646 3' -60.9 NC_005261.1 + 12566 0.67 0.578004
Target:  5'- cGCCGgGCaACGCgGGGCCgagagGGGCGc- -3'
miRNA:   3'- -CGGCgCG-UGUGaCCUGGag---CCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 89176 0.67 0.587935
Target:  5'- aCCGCGgACAacCUGGAgCCgcucgCGGGCGc- -3'
miRNA:   3'- cGGCGCgUGU--GACCU-GGa----GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 107255 0.67 0.617885
Target:  5'- cCCGCGgGCGCgcGGGCa-CGGGCGg- -3'
miRNA:   3'- cGGCGCgUGUGa-CCUGgaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 54049 0.67 0.617885
Target:  5'- aCCGCGCGCGgUGcGCUUCGGuaGUg -3'
miRNA:   3'- cGGCGCGUGUgACcUGGAGCCcgCAa -5'
23646 3' -60.9 NC_005261.1 + 53709 0.67 0.617885
Target:  5'- cGCCGCGCGCcgcggccaGCUGcGGCgCgcccgcaCGGGCGa- -3'
miRNA:   3'- -CGGCGCGUG--------UGAC-CUG-Ga------GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 106563 0.67 0.617885
Target:  5'- gGCCgGCGCGCGCcggccccgGGGCCgccgCGcGGCGc- -3'
miRNA:   3'- -CGG-CGCGUGUGa-------CCUGGa---GC-CCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.