Results 101 - 120 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 115269 | 0.68 | 0.538709 |
Target: 5'- cGCCGcCGCGCGuCUGGGacgCGGGCa-- -3' miRNA: 3'- -CGGC-GCGUGU-GACCUggaGCCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 1823 | 0.68 | 0.538709 |
Target: 5'- aGCCGCGCGUAagcGGCCUCGGcGCGc- -3' miRNA: 3'- -CGGCGCGUGUgacCUGGAGCC-CGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 13667 | 0.68 | 0.538709 |
Target: 5'- cGCCGCGggggggGCGCgGGGCgCgCGGGCGUg -3' miRNA: 3'- -CGGCGCg-----UGUGaCCUG-GaGCCCGCAa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 118147 | 0.68 | 0.538709 |
Target: 5'- gGCuCGCGCagACGCUGG-CCgUCGcGGCGg- -3' miRNA: 3'- -CG-GCGCG--UGUGACCuGG-AGC-CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 18398 | 0.68 | 0.558259 |
Target: 5'- cGCUGCGgACGC-GGGCCUCGGagaccccaGCGc- -3' miRNA: 3'- -CGGCGCgUGUGaCCUGGAGCC--------CGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 13053 | 0.68 | 0.538709 |
Target: 5'- gGCCGCGCGCGCc---CCUgcCGGGCGc- -3' miRNA: 3'- -CGGCGCGUGUGaccuGGA--GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 47590 | 0.69 | 0.453334 |
Target: 5'- aGCCGCGCGCGCgcgagGGAgccgcccCCUgcggGGGCGg- -3' miRNA: 3'- -CGGCGCGUGUGa----CCU-------GGAg---CCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 108520 | 0.69 | 0.454233 |
Target: 5'- cGCCGCGCACGaagGGGUCUCGGuaGg- -3' miRNA: 3'- -CGGCGCGUGUga-CCUGGAGCCcgCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 68297 | 0.69 | 0.46328 |
Target: 5'- gGCCGCGgGCGC-GGACCUCuGcGGCc-- -3' miRNA: 3'- -CGGCGCgUGUGaCCUGGAG-C-CCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 32189 | 0.69 | 0.481651 |
Target: 5'- gGCgGCGCGCGCUGGAgCU--GGCGc- -3' miRNA: 3'- -CGgCGCGUGUGACCUgGAgcCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 71225 | 0.69 | 0.481651 |
Target: 5'- cGCgCGCGCACGC-GGcCCUCGgcGGCGc- -3' miRNA: 3'- -CG-GCGCGUGUGaCCuGGAGC--CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 1177 | 0.69 | 0.490968 |
Target: 5'- cCCGCGC-CGCggccgGGGCCggggcCGGGCGc- -3' miRNA: 3'- cGGCGCGuGUGa----CCUGGa----GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 92608 | 0.69 | 0.490968 |
Target: 5'- cGCgGCGCGUGCcgGGGCCcCGGGCGc- -3' miRNA: 3'- -CGgCGCGUGUGa-CCUGGaGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 66780 | 0.69 | 0.500368 |
Target: 5'- cGUCGCGCGCgaucaugggcuGCUGGACCUCGaacuGGauCGUg -3' miRNA: 3'- -CGGCGCGUG-----------UGACCUGGAGC----CC--GCAa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 113583 | 0.69 | 0.500368 |
Target: 5'- gGCCGC-CGCGCUGGgcgaccucgcGCC-CGGGCa-- -3' miRNA: 3'- -CGGCGcGUGUGACC----------UGGaGCCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 124938 | 0.69 | 0.500368 |
Target: 5'- cGCCGCGCGCGCUGuGCC---GGCGc- -3' miRNA: 3'- -CGGCGCGUGUGACcUGGagcCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 15766 | 0.7 | 0.436432 |
Target: 5'- cGCCGCGaUACACaaGGCCgcuggCGGGCGc- -3' miRNA: 3'- -CGGCGC-GUGUGacCUGGa----GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 133041 | 0.7 | 0.436432 |
Target: 5'- aCCGCGCACGCacGugCUgCGcGGCGUUg -3' miRNA: 3'- cGGCGCGUGUGacCugGA-GC-CCGCAA- -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 107652 | 0.7 | 0.436432 |
Target: 5'- cGCUGCGCGCGCaaacuccGcGGCCccgcCGGGCGUUg -3' miRNA: 3'- -CGGCGCGUGUGa------C-CUGGa---GCCCGCAA- -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 31546 | 0.7 | 0.445283 |
Target: 5'- cGCCGacuCGCACGcCUGGGCCggguccuggaCGGGCGc- -3' miRNA: 3'- -CGGC---GCGUGU-GACCUGGa---------GCCCGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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