miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 78333 0.72 0.331362
Target:  5'- cGCCGaCGCGCcaACgcGGuACCUCGGGCGc- -3'
miRNA:   3'- -CGGC-GCGUG--UGa-CC-UGGAGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 118659 0.72 0.331362
Target:  5'- gGCCGCGCGCucgGGGCUgagggcggCGGGCGc- -3'
miRNA:   3'- -CGGCGCGUGugaCCUGGa-------GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 72779 0.72 0.331362
Target:  5'- gGCCGCGCACGCguccgGGGCCgCGGacaCGUc -3'
miRNA:   3'- -CGGCGCGUGUGa----CCUGGaGCCc--GCAa -5'
23646 3' -60.9 NC_005261.1 + 104838 0.72 0.316945
Target:  5'- gGCCGCGcCACGC-GGACCgcgCGGGUc-- -3'
miRNA:   3'- -CGGCGC-GUGUGaCCUGGa--GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 2512 0.72 0.316945
Target:  5'- aGCCGCGC-CGC--GACCUCGgGGCGg- -3'
miRNA:   3'- -CGGCGCGuGUGacCUGGAGC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 113547 0.71 0.393757
Target:  5'- gGCCguGCGCGCGCUGGACCgCGaGCa-- -3'
miRNA:   3'- -CGG--CGCGUGUGACCUGGaGCcCGcaa -5'
23646 3' -60.9 NC_005261.1 + 73466 0.71 0.393757
Target:  5'- uCCGCGCGCcccccCUGGGCCgCGGcGCGg- -3'
miRNA:   3'- cGGCGCGUGu----GACCUGGaGCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 74831 0.71 0.388821
Target:  5'- cGCCGUGCuCGC-GGACCUggggaggcggcgcgcCGGGCGg- -3'
miRNA:   3'- -CGGCGCGuGUGaCCUGGA---------------GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 23221 0.71 0.377461
Target:  5'- gGCCGCGCGCAaaagccggugcagcGGGCCggccugcUCGGGCGa- -3'
miRNA:   3'- -CGGCGCGUGUga------------CCUGG-------AGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 44971 0.71 0.369485
Target:  5'- -aCGCGCGCGa-GGGCC-CGGGCGg- -3'
miRNA:   3'- cgGCGCGUGUgaCCUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 105137 0.71 0.361625
Target:  5'- cGCCgGCGCGCGCaGGuCCUCGcGGCu-- -3'
miRNA:   3'- -CGG-CGCGUGUGaCCuGGAGC-CCGcaa -5'
23646 3' -60.9 NC_005261.1 + 38346 0.71 0.361625
Target:  5'- gGgCGCGCACGCccagcGGGCCUUugGGGCGg- -3'
miRNA:   3'- -CgGCGCGUGUGa----CCUGGAG--CCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 67052 0.71 0.353882
Target:  5'- cGCCcguguaggcggGCGCGCGCggGGGCucgCUCGGGCGg- -3'
miRNA:   3'- -CGG-----------CGCGUGUGa-CCUG---GAGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 51970 0.71 0.353882
Target:  5'- cGCCGCGC-UGCUGGACCgCGGcGCc-- -3'
miRNA:   3'- -CGGCGCGuGUGACCUGGaGCC-CGcaa -5'
23646 3' -60.9 NC_005261.1 + 101106 0.71 0.353114
Target:  5'- gGCCGCGCGCGCcuuggcgcccucgUGGuCCUCGcGCGa- -3'
miRNA:   3'- -CGGCGCGUGUG-------------ACCuGGAGCcCGCaa -5'
23646 3' -60.9 NC_005261.1 + 58275 0.7 0.410503
Target:  5'- cGCCGCGCuCACgGGGCCggcgcgcCGGGgGg- -3'
miRNA:   3'- -CGGCGCGuGUGaCCUGGa------GCCCgCaa -5'
23646 3' -60.9 NC_005261.1 + 12301 0.7 0.410503
Target:  5'- cGCCGCGgGCACgGGcgcguaGCCggCGGGCGc- -3'
miRNA:   3'- -CGGCGCgUGUGaCC------UGGa-GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 88162 0.7 0.402075
Target:  5'- gGCCGCGCA-GCcGGGCCg-GGGCGa- -3'
miRNA:   3'- -CGGCGCGUgUGaCCUGGagCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 74688 0.7 0.402075
Target:  5'- aCCGCGCGggaGCUGGccGCCgcgCGGGCGc- -3'
miRNA:   3'- cGGCGCGUg--UGACC--UGGa--GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 102495 0.7 0.41904
Target:  5'- cGCCGCGCcaGCGcCUGGGCCUUGcGCa-- -3'
miRNA:   3'- -CGGCGCG--UGU-GACCUGGAGCcCGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.