Results 41 - 60 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 31546 | 0.7 | 0.445283 |
Target: 5'- cGCCGacuCGCACGcCUGGGCCggguccuggaCGGGCGc- -3' miRNA: 3'- -CGGC---GCGUGU-GACCUGGa---------GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 44034 | 0.7 | 0.427684 |
Target: 5'- gGCCGC-CGCGCgGcGGCCgCGGGCGg- -3' miRNA: 3'- -CGGCGcGUGUGaC-CUGGaGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 21201 | 0.7 | 0.427684 |
Target: 5'- gGCCGCGgACGCUGGccccgGCCgcgacggCGGGCc-- -3' miRNA: 3'- -CGGCGCgUGUGACC-----UGGa------GCCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 27489 | 0.7 | 0.402075 |
Target: 5'- cCCGgGCGCAcCUGGACCgccaggucUGGGCGg- -3' miRNA: 3'- cGGCgCGUGU-GACCUGGa-------GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 74688 | 0.7 | 0.402075 |
Target: 5'- aCCGCGCGggaGCUGGccGCCgcgCGGGCGc- -3' miRNA: 3'- cGGCGCGUg--UGACC--UGGa--GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 88162 | 0.7 | 0.402075 |
Target: 5'- gGCCGCGCA-GCcGGGCCg-GGGCGa- -3' miRNA: 3'- -CGGCGCGUgUGaCCUGGagCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 12301 | 0.7 | 0.410503 |
Target: 5'- cGCCGCGgGCACgGGcgcguaGCCggCGGGCGc- -3' miRNA: 3'- -CGGCGCgUGUGaCC------UGGa-GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 58275 | 0.7 | 0.410503 |
Target: 5'- cGCCGCGCuCACgGGGCCggcgcgcCGGGgGg- -3' miRNA: 3'- -CGGCGCGuGUGaCCUGGa------GCCCgCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 102495 | 0.7 | 0.41904 |
Target: 5'- cGCCGCGCcaGCGcCUGGGCCUUGcGCa-- -3' miRNA: 3'- -CGGCGCG--UGU-GACCUGGAGCcCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 124938 | 0.69 | 0.500368 |
Target: 5'- cGCCGCGCGCGCUGuGCC---GGCGc- -3' miRNA: 3'- -CGGCGCGUGUGACcUGGagcCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 113583 | 0.69 | 0.500368 |
Target: 5'- gGCCGC-CGCGCUGGgcgaccucgcGCC-CGGGCa-- -3' miRNA: 3'- -CGGCGcGUGUGACC----------UGGaGCCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 66780 | 0.69 | 0.500368 |
Target: 5'- cGUCGCGCGCgaucaugggcuGCUGGACCUCGaacuGGauCGUg -3' miRNA: 3'- -CGGCGCGUG-----------UGACCUGGAGC----CC--GCAa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 92608 | 0.69 | 0.490968 |
Target: 5'- cGCgGCGCGUGCcgGGGCCcCGGGCGc- -3' miRNA: 3'- -CGgCGCGUGUGa-CCUGGaGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 1177 | 0.69 | 0.490968 |
Target: 5'- cCCGCGC-CGCggccgGGGCCggggcCGGGCGc- -3' miRNA: 3'- cGGCGCGuGUGa----CCUGGa----GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 71225 | 0.69 | 0.481651 |
Target: 5'- cGCgCGCGCACGC-GGcCCUCGgcGGCGc- -3' miRNA: 3'- -CG-GCGCGUGUGaCCuGGAGC--CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 32189 | 0.69 | 0.481651 |
Target: 5'- gGCgGCGCGCGCUGGAgCU--GGCGc- -3' miRNA: 3'- -CGgCGCGUGUGACCUgGAgcCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 68297 | 0.69 | 0.46328 |
Target: 5'- gGCCGCGgGCGC-GGACCUCuGcGGCc-- -3' miRNA: 3'- -CGGCGCgUGUGaCCUGGAG-C-CCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 108520 | 0.69 | 0.454233 |
Target: 5'- cGCCGCGCACGaagGGGUCUCGGuaGg- -3' miRNA: 3'- -CGGCGCGUGUga-CCUGGAGCCcgCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 47590 | 0.69 | 0.453334 |
Target: 5'- aGCCGCGCGCGCgcgagGGAgccgcccCCUgcggGGGCGg- -3' miRNA: 3'- -CGGCGCGUGUGa----CCU-------GGAg---CCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 30557 | 0.68 | 0.509847 |
Target: 5'- gGCCGcCGC-CGCcgGGGCCUCGGaCGg- -3' miRNA: 3'- -CGGC-GCGuGUGa-CCUGGAGCCcGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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