miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 102495 0.7 0.41904
Target:  5'- cGCCGCGCcaGCGcCUGGGCCUUGcGCa-- -3'
miRNA:   3'- -CGGCGCG--UGU-GACCUGGAGCcCGcaa -5'
23646 3' -60.9 NC_005261.1 + 21201 0.7 0.427684
Target:  5'- gGCCGCGgACGCUGGccccgGCCgcgacggCGGGCc-- -3'
miRNA:   3'- -CGGCGCgUGUGACC-----UGGa------GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 44034 0.7 0.427684
Target:  5'- gGCCGC-CGCGCgGcGGCCgCGGGCGg- -3'
miRNA:   3'- -CGGCGcGUGUGaC-CUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 75068 0.7 0.427684
Target:  5'- aCCGCGCGCGCcggcggGGGCUcggCGGGCa-- -3'
miRNA:   3'- cGGCGCGUGUGa-----CCUGGa--GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 71612 0.7 0.427684
Target:  5'- cGCCGCgGCccggGCGC-GGGCC-CGGGCGg- -3'
miRNA:   3'- -CGGCG-CG----UGUGaCCUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 107652 0.7 0.436432
Target:  5'- cGCUGCGCGCGCaaacuccGcGGCCccgcCGGGCGUUg -3'
miRNA:   3'- -CGGCGCGUGUGa------C-CUGGa---GCCCGCAA- -5'
23646 3' -60.9 NC_005261.1 + 133041 0.7 0.436432
Target:  5'- aCCGCGCACGCacGugCUgCGcGGCGUUg -3'
miRNA:   3'- cGGCGCGUGUGacCugGA-GC-CCGCAA- -5'
23646 3' -60.9 NC_005261.1 + 15766 0.7 0.436432
Target:  5'- cGCCGCGaUACACaaGGCCgcuggCGGGCGc- -3'
miRNA:   3'- -CGGCGC-GUGUGacCUGGa----GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 31546 0.7 0.445283
Target:  5'- cGCCGacuCGCACGcCUGGGCCggguccuggaCGGGCGc- -3'
miRNA:   3'- -CGGC---GCGUGU-GACCUGGa---------GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 47590 0.69 0.453334
Target:  5'- aGCCGCGCGCGCgcgagGGAgccgcccCCUgcggGGGCGg- -3'
miRNA:   3'- -CGGCGCGUGUGa----CCU-------GGAg---CCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 108520 0.69 0.454233
Target:  5'- cGCCGCGCACGaagGGGUCUCGGuaGg- -3'
miRNA:   3'- -CGGCGCGUGUga-CCUGGAGCCcgCaa -5'
23646 3' -60.9 NC_005261.1 + 68297 0.69 0.46328
Target:  5'- gGCCGCGgGCGC-GGACCUCuGcGGCc-- -3'
miRNA:   3'- -CGGCGCgUGUGaCCUGGAG-C-CCGcaa -5'
23646 3' -60.9 NC_005261.1 + 32189 0.69 0.481651
Target:  5'- gGCgGCGCGCGCUGGAgCU--GGCGc- -3'
miRNA:   3'- -CGgCGCGUGUGACCUgGAgcCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 71225 0.69 0.481651
Target:  5'- cGCgCGCGCACGC-GGcCCUCGgcGGCGc- -3'
miRNA:   3'- -CG-GCGCGUGUGaCCuGGAGC--CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 92608 0.69 0.490968
Target:  5'- cGCgGCGCGUGCcgGGGCCcCGGGCGc- -3'
miRNA:   3'- -CGgCGCGUGUGa-CCUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 1177 0.69 0.490968
Target:  5'- cCCGCGC-CGCggccgGGGCCggggcCGGGCGc- -3'
miRNA:   3'- cGGCGCGuGUGa----CCUGGa----GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 66780 0.69 0.500368
Target:  5'- cGUCGCGCGCgaucaugggcuGCUGGACCUCGaacuGGauCGUg -3'
miRNA:   3'- -CGGCGCGUG-----------UGACCUGGAGC----CC--GCAa -5'
23646 3' -60.9 NC_005261.1 + 113583 0.69 0.500368
Target:  5'- gGCCGC-CGCGCUGGgcgaccucgcGCC-CGGGCa-- -3'
miRNA:   3'- -CGGCGcGUGUGACC----------UGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 124938 0.69 0.500368
Target:  5'- cGCCGCGCGCGCUGuGCC---GGCGc- -3'
miRNA:   3'- -CGGCGCGUGUGACcUGGagcCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 30557 0.68 0.509847
Target:  5'- gGCCGcCGC-CGCcgGGGCCUCGGaCGg- -3'
miRNA:   3'- -CGGC-GCGuGUGa-CCUGGAGCCcGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.