miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 136925 0.68 0.509847
Target:  5'- gGCCGCgGCGCAUguggugguacaUGGGCCgcgucgUCGGGCa-- -3'
miRNA:   3'- -CGGCG-CGUGUG-----------ACCUGG------AGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 77572 0.68 0.509847
Target:  5'- cGCCGcCGCGCcCUGGcACCcCGGGUa-- -3'
miRNA:   3'- -CGGC-GCGUGuGACC-UGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 30557 0.68 0.509847
Target:  5'- gGCCGcCGC-CGCcgGGGCCUCGGaCGg- -3'
miRNA:   3'- -CGGC-GCGuGUGa-CCUGGAGCCcGCaa -5'
23646 3' -60.9 NC_005261.1 + 1920 0.68 0.509847
Target:  5'- aGCgCGCgGCGCACUGcGCCgCGGGCa-- -3'
miRNA:   3'- -CG-GCG-CGUGUGACcUGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 70408 0.68 0.519399
Target:  5'- cGCCGCGCACAaaGGucACCagcaGGGgGUUg -3'
miRNA:   3'- -CGGCGCGUGUgaCC--UGGag--CCCgCAA- -5'
23646 3' -60.9 NC_005261.1 + 101895 0.68 0.519399
Target:  5'- aGCCGCGCGCGCUccuCCUCGaaagccGCGUg -3'
miRNA:   3'- -CGGCGCGUGUGAccuGGAGCc-----CGCAa -5'
23646 3' -60.9 NC_005261.1 + 110344 0.68 0.519399
Target:  5'- cGCUGCGCGCGCaccuGAUuuccaaCUCGGGCGa- -3'
miRNA:   3'- -CGGCGCGUGUGac--CUG------GAGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 76175 0.68 0.529022
Target:  5'- cGCUGCaGUACGagcgGGGCCU-GGGCGUg -3'
miRNA:   3'- -CGGCG-CGUGUga--CCUGGAgCCCGCAa -5'
23646 3' -60.9 NC_005261.1 + 113306 0.68 0.529022
Target:  5'- uGCCGCGgGC-CUGGGCC-CGGcuGCGc- -3'
miRNA:   3'- -CGGCGCgUGuGACCUGGaGCC--CGCaa -5'
23646 3' -60.9 NC_005261.1 + 97405 0.68 0.529022
Target:  5'- uGCCGCgggcuuggcggGCGCGCcGGGCCUgcccuUGGGCGc- -3'
miRNA:   3'- -CGGCG-----------CGUGUGaCCUGGA-----GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 29061 0.68 0.537738
Target:  5'- cGCCGCgGCcgACACUGGAUuuagggaCUCGGGgGc- -3'
miRNA:   3'- -CGGCG-CG--UGUGACCUG-------GAGCCCgCaa -5'
23646 3' -60.9 NC_005261.1 + 108596 0.68 0.537738
Target:  5'- gGCCuCGCcCACgGGcaccagcGCCUCGGGCGg- -3'
miRNA:   3'- -CGGcGCGuGUGaCC-------UGGAGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 115269 0.68 0.538709
Target:  5'- cGCCGcCGCGCGuCUGGGacgCGGGCa-- -3'
miRNA:   3'- -CGGC-GCGUGU-GACCUggaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 13053 0.68 0.538709
Target:  5'- gGCCGCGCGCGCc---CCUgcCGGGCGc- -3'
miRNA:   3'- -CGGCGCGUGUGaccuGGA--GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 2380 0.68 0.538709
Target:  5'- cGCCGCagcgGCGCGCUGGcggcgagcgcGCCcgCGGGCc-- -3'
miRNA:   3'- -CGGCG----CGUGUGACC----------UGGa-GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 118147 0.68 0.538709
Target:  5'- gGCuCGCGCagACGCUGG-CCgUCGcGGCGg- -3'
miRNA:   3'- -CG-GCGCG--UGUGACCuGG-AGC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 13667 0.68 0.538709
Target:  5'- cGCCGCGggggggGCGCgGGGCgCgCGGGCGUg -3'
miRNA:   3'- -CGGCGCg-----UGUGaCCUG-GaGCCCGCAa -5'
23646 3' -60.9 NC_005261.1 + 1823 0.68 0.538709
Target:  5'- aGCCGCGCGUAagcGGCCUCGGcGCGc- -3'
miRNA:   3'- -CGGCGCGUGUgacCUGGAGCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 2624 0.68 0.548457
Target:  5'- cGCCGgGCgGCAUgGGGCCcagcacgCGGGCGg- -3'
miRNA:   3'- -CGGCgCG-UGUGaCCUGGa------GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 29335 0.68 0.558259
Target:  5'- gGCCGCGUGCGCUucGGCggcgCGGGCGa- -3'
miRNA:   3'- -CGGCGCGUGUGAc-CUGga--GCCCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.