miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 21749 0.66 0.667908
Target:  5'- gGCUGCuGCGC-CUGGAgCgcgcgcCGGGCGa- -3'
miRNA:   3'- -CGGCG-CGUGuGACCUgGa-----GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 3393 0.66 0.667908
Target:  5'- aGCCGCGCcgGCACUuccGCCggCGGGCu-- -3'
miRNA:   3'- -CGGCGCG--UGUGAcc-UGGa-GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 33365 0.66 0.667908
Target:  5'- cGCCGgGcCGCGCcGGGCUgCGGGCc-- -3'
miRNA:   3'- -CGGCgC-GUGUGaCCUGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 96342 0.66 0.666911
Target:  5'- gGCCGCGCGCaccugacgcccugACUGG-CCU-GGcGCGg- -3'
miRNA:   3'- -CGGCGCGUG-------------UGACCuGGAgCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 96306 0.66 0.666911
Target:  5'- gGCCGCGCGCaccugacgcccugACUGG-CCU-GGcGCGg- -3'
miRNA:   3'- -CGGCGCGUG-------------UGACCuGGAgCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 97077 0.66 0.666911
Target:  5'- uCCGCGUcggaggcGCcgGCUGGGCCggGGGCGc- -3'
miRNA:   3'- cGGCGCG-------UG--UGACCUGGagCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 102940 0.66 0.666911
Target:  5'- cGCCGcCGC-CGCUGcggcggcGGCCgCGGGCGc- -3'
miRNA:   3'- -CGGC-GCGuGUGAC-------CUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 32271 0.66 0.657928
Target:  5'- cGCCGagGCGCcgccGCUGGugCUggaggCGGGCGc- -3'
miRNA:   3'- -CGGCg-CGUG----UGACCugGA-----GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 29406 0.66 0.657928
Target:  5'- gGCCGCGCGCuacgcggcggccGCgGGGCCcgCGGcCGUg -3'
miRNA:   3'- -CGGCGCGUG------------UGaCCUGGa-GCCcGCAa -5'
23646 3' -60.9 NC_005261.1 + 68997 0.66 0.657928
Target:  5'- gGCCGCGCggGCGCcGcGGCUUCGuuGGCGa- -3'
miRNA:   3'- -CGGCGCG--UGUGaC-CUGGAGC--CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 74266 0.66 0.657928
Target:  5'- uUCGCGCGCGCgcguCCgcggCGGGCGg- -3'
miRNA:   3'- cGGCGCGUGUGaccuGGa---GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 72853 0.66 0.657928
Target:  5'- cGCCaGCGCccAgGCgUGGACCgCGGGCa-- -3'
miRNA:   3'- -CGG-CGCG--UgUG-ACCUGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 96688 0.66 0.651929
Target:  5'- uGCCGCGCAggUACUGGcgACCcagcagcgaguuggCGGGCa-- -3'
miRNA:   3'- -CGGCGCGU--GUGACC--UGGa-------------GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 103891 0.66 0.651929
Target:  5'- gGCgGCGCGCcaaGCcGGGCCacccgcgccgccaggUCGGGCGc- -3'
miRNA:   3'- -CGgCGCGUG---UGaCCUGG---------------AGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 131693 0.66 0.648928
Target:  5'- -gCGCGCgGCGCUGGACCgccucgagagccaggCGGcGCGc- -3'
miRNA:   3'- cgGCGCG-UGUGACCUGGa--------------GCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 9641 0.66 0.647928
Target:  5'- gGCUGgGUGgGCgGGGCCcacUCGGGCGg- -3'
miRNA:   3'- -CGGCgCGUgUGaCCUGG---AGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 97897 0.66 0.647928
Target:  5'- gGCCgGCGgACcguCUGGGCgC-CGGGCGUc -3'
miRNA:   3'- -CGG-CGCgUGu--GACCUG-GaGCCCGCAa -5'
23646 3' -60.9 NC_005261.1 + 108768 0.66 0.637915
Target:  5'- cGCCGCGC-CAC-GGcACCaUGGGCa-- -3'
miRNA:   3'- -CGGCGCGuGUGaCC-UGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 33607 0.66 0.637915
Target:  5'- cGCCgGCGCGgGCggcgGGGCC-CGGGgGc- -3'
miRNA:   3'- -CGG-CGCGUgUGa---CCUGGaGCCCgCaa -5'
23646 3' -60.9 NC_005261.1 + 104894 0.66 0.637915
Target:  5'- cGCCGCGUGCGCccGGAcgcCCUCcaGGGCc-- -3'
miRNA:   3'- -CGGCGCGUGUGa-CCU---GGAG--CCCGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.