Results 41 - 60 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 33607 | 0.66 | 0.637915 |
Target: 5'- cGCCgGCGCGgGCggcgGGGCC-CGGGgGc- -3' miRNA: 3'- -CGG-CGCGUgUGa---CCUGGaGCCCgCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 104894 | 0.66 | 0.637915 |
Target: 5'- cGCCGCGUGCGCccGGAcgcCCUCcaGGGCc-- -3' miRNA: 3'- -CGGCGCGUGUGa-CCU---GGAG--CCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 97006 | 0.66 | 0.637915 |
Target: 5'- -gCGCGC-CAUUGGgcggGCCgUCGGGCGc- -3' miRNA: 3'- cgGCGCGuGUGACC----UGG-AGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 108768 | 0.66 | 0.637915 |
Target: 5'- cGCCGCGC-CAC-GGcACCaUGGGCa-- -3' miRNA: 3'- -CGGCGCGuGUGaCC-UGGaGCCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 117673 | 0.66 | 0.637915 |
Target: 5'- cGCCGCGCccgGCcGGGCC-CGcGGCGa- -3' miRNA: 3'- -CGGCGCGug-UGaCCUGGaGC-CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 10983 | 0.66 | 0.636914 |
Target: 5'- cCCGCGCccgacugGCGCUGGuCCUCcGGCu-- -3' miRNA: 3'- cGGCGCG-------UGUGACCuGGAGcCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 81201 | 0.66 | 0.627899 |
Target: 5'- gGCCGCGCggGCGCgagccGGACCacCGuGGCGc- -3' miRNA: 3'- -CGGCGCG--UGUGa----CCUGGa-GC-CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 76914 | 0.66 | 0.627899 |
Target: 5'- cGCUGUGCGUGCUGGGCCgccgcgUCGGGaccauCGUUa -3' miRNA: 3'- -CGGCGCGUGUGACCUGG------AGCCC-----GCAA- -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 2671 | 0.66 | 0.627899 |
Target: 5'- cGCCGCGCugG--GGACCcggCGGcGCGc- -3' miRNA: 3'- -CGGCGCGugUgaCCUGGa--GCC-CGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 102463 | 0.66 | 0.627899 |
Target: 5'- cGgCGCGCAgGCgccGGACCUCcucGGCGc- -3' miRNA: 3'- -CgGCGCGUgUGa--CCUGGAGc--CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 51728 | 0.66 | 0.627899 |
Target: 5'- gGUCGUGCGCACgcaGGcCCcCGGGCu-- -3' miRNA: 3'- -CGGCGCGUGUGa--CCuGGaGCCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 118379 | 0.66 | 0.627899 |
Target: 5'- gGgCGCGCggcccgagGCGCUGGcgGCCgCGGGCGc- -3' miRNA: 3'- -CgGCGCG--------UGUGACC--UGGaGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 107255 | 0.67 | 0.617885 |
Target: 5'- cCCGCGgGCGCgcGGGCa-CGGGCGg- -3' miRNA: 3'- cGGCGCgUGUGa-CCUGgaGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 54049 | 0.67 | 0.617885 |
Target: 5'- aCCGCGCGCGgUGcGCUUCGGuaGUg -3' miRNA: 3'- cGGCGCGUGUgACcUGGAGCCcgCAa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 53709 | 0.67 | 0.617885 |
Target: 5'- cGCCGCGCGCcgcggccaGCUGcGGCgCgcccgcaCGGGCGa- -3' miRNA: 3'- -CGGCGCGUG--------UGAC-CUG-Ga------GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 106563 | 0.67 | 0.617885 |
Target: 5'- gGCCgGCGCGCGCcggccccgGGGCCgccgCGcGGCGc- -3' miRNA: 3'- -CGG-CGCGUGUGa-------CCUGGa---GC-CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 102842 | 0.67 | 0.617885 |
Target: 5'- cGCCGCGcCACguGCUGGGCCagCaGcGCGUc -3' miRNA: 3'- -CGGCGC-GUG--UGACCUGGa-GcC-CGCAa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 31734 | 0.67 | 0.617885 |
Target: 5'- gGCCGCGCGa--UGGcccgGCCgUCGGGCa-- -3' miRNA: 3'- -CGGCGCGUgugACC----UGG-AGCCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 112915 | 0.67 | 0.607882 |
Target: 5'- cGCUGCGUGCGCgaGGGCga-GGGCGg- -3' miRNA: 3'- -CGGCGCGUGUGa-CCUGgagCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 105556 | 0.67 | 0.607882 |
Target: 5'- cGCaCGCGCGCagggccagguacGCguagaGGGCCUCgGGGCGc- -3' miRNA: 3'- -CG-GCGCGUG------------UGa----CCUGGAG-CCCGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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