miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 83848 0.67 0.607882
Target:  5'- gGCCGCgGCccCGCUGGGCUgggcCGGGCc-- -3'
miRNA:   3'- -CGGCG-CGu-GUGACCUGGa---GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 69225 0.67 0.597896
Target:  5'- aGCUGUGCGCGCUGGGgCgguucgcCGaGGCGc- -3'
miRNA:   3'- -CGGCGCGUGUGACCUgGa------GC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 66747 0.67 0.597896
Target:  5'- aGuuGUGCACggGCUGGuCCacCGGGUGUg -3'
miRNA:   3'- -CggCGCGUG--UGACCuGGa-GCCCGCAa -5'
23646 3' -60.9 NC_005261.1 + 36963 0.67 0.597896
Target:  5'- cGCCGCGCgGCGCa-GAgCUCGGuGCGg- -3'
miRNA:   3'- -CGGCGCG-UGUGacCUgGAGCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 133642 0.67 0.597896
Target:  5'- cGCCGCGCcgcugcgcgaGCGCUGcGugCUCGccuccGGCGc- -3'
miRNA:   3'- -CGGCGCG----------UGUGAC-CugGAGC-----CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 79854 0.67 0.594905
Target:  5'- aGCCGC-CGCGCUGGgguugagcuuggccGCCUCggcccacaGGGCGc- -3'
miRNA:   3'- -CGGCGcGUGUGACC--------------UGGAG--------CCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 40619 0.67 0.587935
Target:  5'- aGCCGCGCugguCGC-GGACCacgaugUUGGGCa-- -3'
miRNA:   3'- -CGGCGCGu---GUGaCCUGG------AGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 129586 0.67 0.587935
Target:  5'- gGCCGCGCGcCGCgGGACacgcggcaauUUCGcGGCGg- -3'
miRNA:   3'- -CGGCGCGU-GUGaCCUG----------GAGC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 96970 0.67 0.587935
Target:  5'- cGCCGgGCGCGauucacGcGGCCUCGGcGCGg- -3'
miRNA:   3'- -CGGCgCGUGUga----C-CUGGAGCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 89176 0.67 0.587935
Target:  5'- aCCGCGgACAacCUGGAgCCgcucgCGGGCGc- -3'
miRNA:   3'- cGGCGCgUGU--GACCU-GGa----GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 135451 0.67 0.587935
Target:  5'- gGCgGCGCGgGCgcugcgGGACCUCGuacugcgcGGCGa- -3'
miRNA:   3'- -CGgCGCGUgUGa-----CCUGGAGC--------CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 48042 0.67 0.578004
Target:  5'- aGCaCGCGCGCGCggucgGGGCC-CGcGGCc-- -3'
miRNA:   3'- -CG-GCGCGUGUGa----CCUGGaGC-CCGcaa -5'
23646 3' -60.9 NC_005261.1 + 12566 0.67 0.578004
Target:  5'- cGCCGgGCaACGCgGGGCCgagagGGGCGc- -3'
miRNA:   3'- -CGGCgCG-UGUGaCCUGGag---CCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 132615 0.67 0.578004
Target:  5'- aGCCGCcaggGgGCGCUGGcGCCgaggacgCGGGCGc- -3'
miRNA:   3'- -CGGCG----CgUGUGACC-UGGa------GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 133519 0.67 0.578004
Target:  5'- aCCGUGUuCACcgUGGACCUCucgGGGCGc- -3'
miRNA:   3'- cGGCGCGuGUG--ACCUGGAG---CCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 90874 0.67 0.56811
Target:  5'- cGCCGUcuGCGCGCUGGGCgaCGGcauggcGCGg- -3'
miRNA:   3'- -CGGCG--CGUGUGACCUGgaGCC------CGCaa -5'
23646 3' -60.9 NC_005261.1 + 38249 0.67 0.56811
Target:  5'- cGCCGggcuCGCACGCcagccUGGGCUggGGGCGg- -3'
miRNA:   3'- -CGGC----GCGUGUG-----ACCUGGagCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 37163 0.67 0.56811
Target:  5'- cGCuCGCGCGCGCuUGcGCCU-GGGCGc- -3'
miRNA:   3'- -CG-GCGCGUGUG-ACcUGGAgCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 80048 0.67 0.56811
Target:  5'- cGCCGuCGC-CACUGG-CggCGGGCGc- -3'
miRNA:   3'- -CGGC-GCGuGUGACCuGgaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 43781 0.67 0.56811
Target:  5'- gGCgGCGCGCGgaGGGCgCcgCGGGUGa- -3'
miRNA:   3'- -CGgCGCGUGUgaCCUG-Ga-GCCCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.