Results 81 - 100 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23646 | 3' | -60.9 | NC_005261.1 | + | 88272 | 0.68 | 0.558259 |
Target: 5'- cGCCGCGCuGC-CUGGACgaCGacGGCGg- -3' miRNA: 3'- -CGGCGCG-UGuGACCUGgaGC--CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 4546 | 0.68 | 0.558259 |
Target: 5'- cGCCGgGCccugGCcuugGCUGGAUCcgCGGGCGg- -3' miRNA: 3'- -CGGCgCG----UG----UGACCUGGa-GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 106958 | 0.68 | 0.558259 |
Target: 5'- cCCGgGCGCGCUccGCCUCGGcGCGc- -3' miRNA: 3'- cGGCgCGUGUGAccUGGAGCC-CGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 93654 | 0.68 | 0.558259 |
Target: 5'- uCCGCGUACGCccaccGGuCCgCGGGCGg- -3' miRNA: 3'- cGGCGCGUGUGa----CCuGGaGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 29335 | 0.68 | 0.558259 |
Target: 5'- gGCCGCGUGCGCUucGGCggcgCGGGCGa- -3' miRNA: 3'- -CGGCGCGUGUGAc-CUGga--GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 18398 | 0.68 | 0.558259 |
Target: 5'- cGCUGCGgACGC-GGGCCUCGGagaccccaGCGc- -3' miRNA: 3'- -CGGCGCgUGUGaCCUGGAGCC--------CGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 2624 | 0.68 | 0.548457 |
Target: 5'- cGCCGgGCgGCAUgGGGCCcagcacgCGGGCGg- -3' miRNA: 3'- -CGGCgCG-UGUGaCCUGGa------GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 118147 | 0.68 | 0.538709 |
Target: 5'- gGCuCGCGCagACGCUGG-CCgUCGcGGCGg- -3' miRNA: 3'- -CG-GCGCG--UGUGACCuGG-AGC-CCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 1823 | 0.68 | 0.538709 |
Target: 5'- aGCCGCGCGUAagcGGCCUCGGcGCGc- -3' miRNA: 3'- -CGGCGCGUGUgacCUGGAGCC-CGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 13667 | 0.68 | 0.538709 |
Target: 5'- cGCCGCGggggggGCGCgGGGCgCgCGGGCGUg -3' miRNA: 3'- -CGGCGCg-----UGUGaCCUG-GaGCCCGCAa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 2380 | 0.68 | 0.538709 |
Target: 5'- cGCCGCagcgGCGCGCUGGcggcgagcgcGCCcgCGGGCc-- -3' miRNA: 3'- -CGGCG----CGUGUGACC----------UGGa-GCCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 13053 | 0.68 | 0.538709 |
Target: 5'- gGCCGCGCGCGCc---CCUgcCGGGCGc- -3' miRNA: 3'- -CGGCGCGUGUGaccuGGA--GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 115269 | 0.68 | 0.538709 |
Target: 5'- cGCCGcCGCGCGuCUGGGacgCGGGCa-- -3' miRNA: 3'- -CGGC-GCGUGU-GACCUggaGCCCGcaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 108596 | 0.68 | 0.537738 |
Target: 5'- gGCCuCGCcCACgGGcaccagcGCCUCGGGCGg- -3' miRNA: 3'- -CGGcGCGuGUGaCC-------UGGAGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 29061 | 0.68 | 0.537738 |
Target: 5'- cGCCGCgGCcgACACUGGAUuuagggaCUCGGGgGc- -3' miRNA: 3'- -CGGCG-CG--UGUGACCUG-------GAGCCCgCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 97405 | 0.68 | 0.529022 |
Target: 5'- uGCCGCgggcuuggcggGCGCGCcGGGCCUgcccuUGGGCGc- -3' miRNA: 3'- -CGGCG-----------CGUGUGaCCUGGA-----GCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 76175 | 0.68 | 0.529022 |
Target: 5'- cGCUGCaGUACGagcgGGGCCU-GGGCGUg -3' miRNA: 3'- -CGGCG-CGUGUga--CCUGGAgCCCGCAa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 113306 | 0.68 | 0.529022 |
Target: 5'- uGCCGCGgGC-CUGGGCC-CGGcuGCGc- -3' miRNA: 3'- -CGGCGCgUGuGACCUGGaGCC--CGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 110344 | 0.68 | 0.519399 |
Target: 5'- cGCUGCGCGCGCaccuGAUuuccaaCUCGGGCGa- -3' miRNA: 3'- -CGGCGCGUGUGac--CUG------GAGCCCGCaa -5' |
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23646 | 3' | -60.9 | NC_005261.1 | + | 101895 | 0.68 | 0.519399 |
Target: 5'- aGCCGCGCGCGCUccuCCUCGaaagccGCGUg -3' miRNA: 3'- -CGGCGCGUGUGAccuGGAGCc-----CGCAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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