miRNA display CGI


Results 1 - 20 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 1177 0.69 0.490968
Target:  5'- cCCGCGC-CGCggccgGGGCCggggcCGGGCGc- -3'
miRNA:   3'- cGGCGCGuGUGa----CCUGGa----GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 1823 0.68 0.538709
Target:  5'- aGCCGCGCGUAagcGGCCUCGGcGCGc- -3'
miRNA:   3'- -CGGCGCGUGUgacCUGGAGCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 1920 0.68 0.509847
Target:  5'- aGCgCGCgGCGCACUGcGCCgCGGGCa-- -3'
miRNA:   3'- -CG-GCG-CGUGUGACcUGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 2380 0.68 0.538709
Target:  5'- cGCCGCagcgGCGCGCUGGcggcgagcgcGCCcgCGGGCc-- -3'
miRNA:   3'- -CGGCG----CGUGUGACC----------UGGa-GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 2512 0.72 0.316945
Target:  5'- aGCCGCGC-CGC--GACCUCGgGGCGg- -3'
miRNA:   3'- -CGGCGCGuGUGacCUGGAGC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 2550 0.78 0.129933
Target:  5'- cGCCGCG-GCGCUGGGCg-CGGGCGUg -3'
miRNA:   3'- -CGGCGCgUGUGACCUGgaGCCCGCAa -5'
23646 3' -60.9 NC_005261.1 + 2624 0.68 0.548457
Target:  5'- cGCCGgGCgGCAUgGGGCCcagcacgCGGGCGg- -3'
miRNA:   3'- -CGGCgCG-UGUGaCCUGGa------GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 2671 0.66 0.627899
Target:  5'- cGCCGCGCugG--GGACCcggCGGcGCGc- -3'
miRNA:   3'- -CGGCGCGugUgaCCUGGa--GCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 3393 0.66 0.667908
Target:  5'- aGCCGCGCcgGCACUuccGCCggCGGGCu-- -3'
miRNA:   3'- -CGGCGCG--UGUGAcc-UGGa-GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 3813 0.73 0.270233
Target:  5'- aGCCGCucGCGCGCUgccgcGGGCC-CGGGCGc- -3'
miRNA:   3'- -CGGCG--CGUGUGA-----CCUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 4406 0.66 0.687778
Target:  5'- gGCgGCgGCGCGCUGccgggccaGGCCUCgccggaGGGCGUc -3'
miRNA:   3'- -CGgCG-CGUGUGAC--------CUGGAG------CCCGCAa -5'
23646 3' -60.9 NC_005261.1 + 4546 0.68 0.558259
Target:  5'- cGCCGgGCccugGCcuugGCUGGAUCcgCGGGCGg- -3'
miRNA:   3'- -CGGCgCG----UG----UGACCUGGa-GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 9641 0.66 0.647928
Target:  5'- gGCUGgGUGgGCgGGGCCcacUCGGGCGg- -3'
miRNA:   3'- -CGGCgCGUgUGaCCUGG---AGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 10983 0.66 0.636914
Target:  5'- cCCGCGCccgacugGCGCUGGuCCUCcGGCu-- -3'
miRNA:   3'- cGGCGCG-------UGUGACCuGGAGcCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 12301 0.7 0.410503
Target:  5'- cGCCGCGgGCACgGGcgcguaGCCggCGGGCGc- -3'
miRNA:   3'- -CGGCGCgUGUGaCC------UGGa-GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 12566 0.67 0.578004
Target:  5'- cGCCGgGCaACGCgGGGCCgagagGGGCGc- -3'
miRNA:   3'- -CGGCgCG-UGUGaCCUGGag---CCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 13053 0.68 0.538709
Target:  5'- gGCCGCGCGCGCc---CCUgcCGGGCGc- -3'
miRNA:   3'- -CGGCGCGUGUGaccuGGA--GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 13667 0.68 0.538709
Target:  5'- cGCCGCGggggggGCGCgGGGCgCgCGGGCGUg -3'
miRNA:   3'- -CGGCGCg-----UGUGaCCUG-GaGCCCGCAa -5'
23646 3' -60.9 NC_005261.1 + 15766 0.7 0.436432
Target:  5'- cGCCGCGaUACACaaGGCCgcuggCGGGCGc- -3'
miRNA:   3'- -CGGCGC-GUGUGacCUGGa----GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 16715 0.66 0.687778
Target:  5'- -gCGCGCGCcgguACUGGcCCUC-GGCGa- -3'
miRNA:   3'- cgGCGCGUG----UGACCuGGAGcCCGCaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.