miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 33365 0.66 0.667908
Target:  5'- cGCCGgGcCGCGCcGGGCUgCGGGCc-- -3'
miRNA:   3'- -CGGCgC-GUGUGaCCUGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 33607 0.66 0.637915
Target:  5'- cGCCgGCGCGgGCggcgGGGCC-CGGGgGc- -3'
miRNA:   3'- -CGG-CGCGUgUGa---CCUGGaGCCCgCaa -5'
23646 3' -60.9 NC_005261.1 + 33780 0.75 0.223817
Target:  5'- cGCgGCGaGCGCUGGGCCccgcgCGGGCGg- -3'
miRNA:   3'- -CGgCGCgUGUGACCUGGa----GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 36645 0.66 0.637915
Target:  5'- aGCCG-GCGCGC-GGGCUUgGGGCc-- -3'
miRNA:   3'- -CGGCgCGUGUGaCCUGGAgCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 36963 0.67 0.597896
Target:  5'- cGCCGCGCgGCGCa-GAgCUCGGuGCGg- -3'
miRNA:   3'- -CGGCGCG-UGUGacCUgGAGCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 37163 0.67 0.56811
Target:  5'- cGCuCGCGCGCGCuUGcGCCU-GGGCGc- -3'
miRNA:   3'- -CG-GCGCGUGUG-ACcUGGAgCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 38168 0.66 0.667908
Target:  5'- gGCCGCaGCACGgcugcCUGGagGCCU-GGGCGc- -3'
miRNA:   3'- -CGGCG-CGUGU-----GACC--UGGAgCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 38249 0.67 0.56811
Target:  5'- cGCCGggcuCGCACGCcagccUGGGCUggGGGCGg- -3'
miRNA:   3'- -CGGC----GCGUGUG-----ACCUGGagCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 38346 0.71 0.361625
Target:  5'- gGgCGCGCACGCccagcGGGCCUUugGGGCGg- -3'
miRNA:   3'- -CgGCGCGUGUGa----CCUGGAG--CCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 40619 0.67 0.587935
Target:  5'- aGCCGCGCugguCGC-GGACCacgaugUUGGGCa-- -3'
miRNA:   3'- -CGGCGCGu---GUGaCCUGG------AGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 42995 0.66 0.687778
Target:  5'- aGCUGgGCuACACcgaGGGCCa-GGGCGUg -3'
miRNA:   3'- -CGGCgCG-UGUGa--CCUGGagCCCGCAa -5'
23646 3' -60.9 NC_005261.1 + 43781 0.67 0.56811
Target:  5'- gGCgGCGCGCGgaGGGCgCcgCGGGUGa- -3'
miRNA:   3'- -CGgCGCGUGUgaCCUG-Ga-GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 44034 0.7 0.427684
Target:  5'- gGCCGC-CGCGCgGcGGCCgCGGGCGg- -3'
miRNA:   3'- -CGGCGcGUGUGaC-CUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 44971 0.71 0.369485
Target:  5'- -aCGCGCGCGa-GGGCC-CGGGCGg- -3'
miRNA:   3'- cgGCGCGUGUgaCCUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 45939 0.74 0.234746
Target:  5'- cGCCGCGCGCGa-GGGCCgccaGGGCGc- -3'
miRNA:   3'- -CGGCGCGUGUgaCCUGGag--CCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 47590 0.69 0.453334
Target:  5'- aGCCGCGCGCGCgcgagGGAgccgcccCCUgcggGGGCGg- -3'
miRNA:   3'- -CGGCGCGUGUGa----CCU-------GGAg---CCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 47703 0.66 0.687778
Target:  5'- cGCCGCGUcgGCgGCgucggGGGCCUCcucGGCGg- -3'
miRNA:   3'- -CGGCGCG--UG-UGa----CCUGGAGc--CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 48042 0.67 0.578004
Target:  5'- aGCaCGCGCGCGCggucgGGGCC-CGcGGCc-- -3'
miRNA:   3'- -CG-GCGCGUGUGa----CCUGGaGC-CCGcaa -5'
23646 3' -60.9 NC_005261.1 + 48667 0.66 0.687778
Target:  5'- aGCCGCGCGgcaacggcgacUAC-GGGCCcgCGGGCc-- -3'
miRNA:   3'- -CGGCGCGU-----------GUGaCCUGGa-GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 49451 0.68 0.509847
Target:  5'- cCCGCGCGCGCcgcGGAaggCGGGCGc- -3'
miRNA:   3'- cGGCGCGUGUGa--CCUggaGCCCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.