miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 51413 0.77 0.154993
Target:  5'- cCCGCGCGCccaccgccuGCUGGGCCcCGGGCGc- -3'
miRNA:   3'- cGGCGCGUG---------UGACCUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 51728 0.66 0.627899
Target:  5'- gGUCGUGCGCACgcaGGcCCcCGGGCu-- -3'
miRNA:   3'- -CGGCGCGUGUGa--CCuGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 51970 0.71 0.353882
Target:  5'- cGCCGCGC-UGCUGGACCgCGGcGCc-- -3'
miRNA:   3'- -CGGCGCGuGUGACCUGGaGCC-CGcaa -5'
23646 3' -60.9 NC_005261.1 + 52665 0.73 0.282987
Target:  5'- cCCGCGCGCACUucgagcGGGCCcugcucgCGGGCGc- -3'
miRNA:   3'- cGGCGCGUGUGA------CCUGGa------GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 53554 0.66 0.677861
Target:  5'- gGCCGCGCcgcggcccaggcGCACUaGcGGCCgCGGGCc-- -3'
miRNA:   3'- -CGGCGCG------------UGUGA-C-CUGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 53709 0.67 0.617885
Target:  5'- cGCCGCGCGCcgcggccaGCUGcGGCgCgcccgcaCGGGCGa- -3'
miRNA:   3'- -CGGCGCGUG--------UGAC-CUG-Ga------GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 53952 0.66 0.667908
Target:  5'- cGCCGCGCuCGCgGG--UUCGGGUGg- -3'
miRNA:   3'- -CGGCGCGuGUGaCCugGAGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 54049 0.67 0.617885
Target:  5'- aCCGCGCGCGgUGcGCUUCGGuaGUg -3'
miRNA:   3'- cGGCGCGUGUgACcUGGAGCCcgCAa -5'
23646 3' -60.9 NC_005261.1 + 54270 1.06 0.001322
Target:  5'- cGCCGCGCACACUGGACCUCGGGCGUUu -3'
miRNA:   3'- -CGGCGCGUGUGACCUGGAGCCCGCAA- -5'
23646 3' -60.9 NC_005261.1 + 55497 0.66 0.677861
Target:  5'- cGCgGCGCGCuCUGGagcaGCCacUGGGCGa- -3'
miRNA:   3'- -CGgCGCGUGuGACC----UGGa-GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 58275 0.7 0.410503
Target:  5'- cGCCGCGCuCACgGGGCCggcgcgcCGGGgGg- -3'
miRNA:   3'- -CGGCGCGuGUGaCCUGGa------GCCCgCaa -5'
23646 3' -60.9 NC_005261.1 + 59638 0.66 0.687778
Target:  5'- cUCGCGguCGCUGu-CCUCGaGGCGg- -3'
miRNA:   3'- cGGCGCguGUGACcuGGAGC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 63958 0.66 0.667908
Target:  5'- cCCGUGCGCAgCUGGugCgucagcgccagCGGGCu-- -3'
miRNA:   3'- cGGCGCGUGU-GACCugGa----------GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 66747 0.67 0.597896
Target:  5'- aGuuGUGCACggGCUGGuCCacCGGGUGUg -3'
miRNA:   3'- -CggCGCGUG--UGACCuGGa-GCCCGCAa -5'
23646 3' -60.9 NC_005261.1 + 66780 0.69 0.500368
Target:  5'- cGUCGCGCGCgaucaugggcuGCUGGACCUCGaacuGGauCGUg -3'
miRNA:   3'- -CGGCGCGUG-----------UGACCUGGAGC----CC--GCAa -5'
23646 3' -60.9 NC_005261.1 + 67052 0.71 0.353882
Target:  5'- cGCCcguguaggcggGCGCGCGCggGGGCucgCUCGGGCGg- -3'
miRNA:   3'- -CGG-----------CGCGUGUGa-CCUG---GAGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 68297 0.69 0.46328
Target:  5'- gGCCGCGgGCGC-GGACCUCuGcGGCc-- -3'
miRNA:   3'- -CGGCGCgUGUGaCCUGGAG-C-CCGcaa -5'
23646 3' -60.9 NC_005261.1 + 68997 0.66 0.657928
Target:  5'- gGCCGCGCggGCGCcGcGGCUUCGuuGGCGa- -3'
miRNA:   3'- -CGGCGCG--UGUGaC-CUGGAGC--CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 69225 0.67 0.597896
Target:  5'- aGCUGUGCGCGCUGGGgCgguucgcCGaGGCGc- -3'
miRNA:   3'- -CGGCGCGUGUGACCUgGa------GC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 69364 0.74 0.234746
Target:  5'- gGCCGCGCgcGCGCUGGACCUCGa----- -3'
miRNA:   3'- -CGGCGCG--UGUGACCUGGAGCccgcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.