miRNA display CGI


Results 81 - 100 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 70234 0.77 0.158912
Target:  5'- cGCCGCGCGCaaACUcGACCUCGGcGCGc- -3'
miRNA:   3'- -CGGCGCGUG--UGAcCUGGAGCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 70408 0.68 0.519399
Target:  5'- cGCCGCGCACAaaGGucACCagcaGGGgGUUg -3'
miRNA:   3'- -CGGCGCGUGUgaCC--UGGag--CCCgCAA- -5'
23646 3' -60.9 NC_005261.1 + 71225 0.69 0.481651
Target:  5'- cGCgCGCGCACGC-GGcCCUCGgcGGCGc- -3'
miRNA:   3'- -CG-GCGCGUGUGaCCuGGAGC--CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 71612 0.7 0.427684
Target:  5'- cGCCGCgGCccggGCGC-GGGCC-CGGGCGg- -3'
miRNA:   3'- -CGGCG-CG----UGUGaCCUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 71943 0.73 0.303004
Target:  5'- uGCCGCGCGCcccACUGG-CgUCGGcGCGg- -3'
miRNA:   3'- -CGGCGCGUG---UGACCuGgAGCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 72779 0.72 0.331362
Target:  5'- gGCCGCGCACGCguccgGGGCCgCGGacaCGUc -3'
miRNA:   3'- -CGGCGCGUGUGa----CCUGGaGCCc--GCAa -5'
23646 3' -60.9 NC_005261.1 + 72853 0.66 0.657928
Target:  5'- cGCCaGCGCccAgGCgUGGACCgCGGGCa-- -3'
miRNA:   3'- -CGG-CGCG--UgUG-ACCUGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 73466 0.71 0.393757
Target:  5'- uCCGCGCGCcccccCUGGGCCgCGGcGCGg- -3'
miRNA:   3'- cGGCGCGUGu----GACCUGGaGCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 73818 0.66 0.637915
Target:  5'- aGCCGCGCcCGCgccuagcccGGcUCUUGGGCGa- -3'
miRNA:   3'- -CGGCGCGuGUGa--------CCuGGAGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 74266 0.66 0.657928
Target:  5'- uUCGCGCGCGCgcguCCgcggCGGGCGg- -3'
miRNA:   3'- cGGCGCGUGUGaccuGGa---GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 74688 0.7 0.402075
Target:  5'- aCCGCGCGggaGCUGGccGCCgcgCGGGCGc- -3'
miRNA:   3'- cGGCGCGUg--UGACC--UGGa--GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 74831 0.71 0.388821
Target:  5'- cGCCGUGCuCGC-GGACCUggggaggcggcgcgcCGGGCGg- -3'
miRNA:   3'- -CGGCGCGuGUGaCCUGGA---------------GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 75068 0.7 0.427684
Target:  5'- aCCGCGCGCGCcggcggGGGCUcggCGGGCa-- -3'
miRNA:   3'- cGGCGCGUGUGa-----CCUGGa--GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 76175 0.68 0.529022
Target:  5'- cGCUGCaGUACGagcgGGGCCU-GGGCGUg -3'
miRNA:   3'- -CGGCG-CGUGUga--CCUGGAgCCCGCAa -5'
23646 3' -60.9 NC_005261.1 + 76914 0.66 0.627899
Target:  5'- cGCUGUGCGUGCUGGGCCgccgcgUCGGGaccauCGUUa -3'
miRNA:   3'- -CGGCGCGUGUGACCUGG------AGCCC-----GCAA- -5'
23646 3' -60.9 NC_005261.1 + 77038 0.74 0.264031
Target:  5'- gGCCGCGCGCGC-GGcCCUC-GGCGa- -3'
miRNA:   3'- -CGGCGCGUGUGaCCuGGAGcCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 77572 0.68 0.509847
Target:  5'- cGCCGcCGCGCcCUGGcACCcCGGGUa-- -3'
miRNA:   3'- -CGGC-GCGUGuGACC-UGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 78333 0.72 0.331362
Target:  5'- cGCCGaCGCGCcaACgcGGuACCUCGGGCGc- -3'
miRNA:   3'- -CGGC-GCGUG--UGa-CC-UGGAGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 79854 0.67 0.594905
Target:  5'- aGCCGC-CGCGCUGGgguugagcuuggccGCCUCggcccacaGGGCGc- -3'
miRNA:   3'- -CGGCGcGUGUGACC--------------UGGAG--------CCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 80048 0.67 0.56811
Target:  5'- cGCCGuCGC-CACUGG-CggCGGGCGc- -3'
miRNA:   3'- -CGGC-GCGuGUGACCuGgaGCCCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.