miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 136925 0.68 0.509847
Target:  5'- gGCCGCgGCGCAUguggugguacaUGGGCCgcgucgUCGGGCa-- -3'
miRNA:   3'- -CGGCG-CGUGUG-----------ACCUGG------AGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 135451 0.67 0.587935
Target:  5'- gGCgGCGCGgGCgcugcgGGACCUCGuacugcgcGGCGa- -3'
miRNA:   3'- -CGgCGCGUgUGa-----CCUGGAGC--------CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 133642 0.67 0.597896
Target:  5'- cGCCGCGCcgcugcgcgaGCGCUGcGugCUCGccuccGGCGc- -3'
miRNA:   3'- -CGGCGCG----------UGUGAC-CugGAGC-----CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 133519 0.67 0.578004
Target:  5'- aCCGUGUuCACcgUGGACCUCucgGGGCGc- -3'
miRNA:   3'- cGGCGCGuGUG--ACCUGGAG---CCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 133041 0.7 0.436432
Target:  5'- aCCGCGCACGCacGugCUgCGcGGCGUUg -3'
miRNA:   3'- cGGCGCGUGUGacCugGA-GC-CCGCAA- -5'
23646 3' -60.9 NC_005261.1 + 132615 0.67 0.578004
Target:  5'- aGCCGCcaggGgGCGCUGGcGCCgaggacgCGGGCGc- -3'
miRNA:   3'- -CGGCG----CgUGUGACC-UGGa------GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 131693 0.66 0.648928
Target:  5'- -gCGCGCgGCGCUGGACCgccucgagagccaggCGGcGCGc- -3'
miRNA:   3'- cgGCGCG-UGUGACCUGGa--------------GCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 129586 0.67 0.587935
Target:  5'- gGCCGCGCGcCGCgGGACacgcggcaauUUCGcGGCGg- -3'
miRNA:   3'- -CGGCGCGU-GUGaCCUG----------GAGC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 125295 0.79 0.120382
Target:  5'- gGCCGCGgGCGCcGGACCcgCGGGCGc- -3'
miRNA:   3'- -CGGCGCgUGUGaCCUGGa-GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 124938 0.69 0.500368
Target:  5'- cGCCGCGCGCGCUGuGCC---GGCGc- -3'
miRNA:   3'- -CGGCGCGUGUGACcUGGagcCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 121790 0.66 0.687778
Target:  5'- gGCCG-GCGgGCUGGGCaggGGGCGc- -3'
miRNA:   3'- -CGGCgCGUgUGACCUGgagCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 118659 0.72 0.331362
Target:  5'- gGCCGCGCGCucgGGGCUgagggcggCGGGCGc- -3'
miRNA:   3'- -CGGCGCGUGugaCCUGGa-------GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 118379 0.66 0.627899
Target:  5'- gGgCGCGCggcccgagGCGCUGGcgGCCgCGGGCGc- -3'
miRNA:   3'- -CgGCGCG--------UGUGACC--UGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 118273 0.66 0.677861
Target:  5'- aCUGCGCGCACUucgugacGGCCgccgCGGGCa-- -3'
miRNA:   3'- cGGCGCGUGUGAc------CUGGa---GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 118147 0.68 0.538709
Target:  5'- gGCuCGCGCagACGCUGG-CCgUCGcGGCGg- -3'
miRNA:   3'- -CG-GCGCG--UGUGACCuGG-AGC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 117673 0.66 0.637915
Target:  5'- cGCCGCGCccgGCcGGGCC-CGcGGCGa- -3'
miRNA:   3'- -CGGCGCGug-UGaCCUGGaGC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 115269 0.68 0.538709
Target:  5'- cGCCGcCGCGCGuCUGGGacgCGGGCa-- -3'
miRNA:   3'- -CGGC-GCGUGU-GACCUggaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 113583 0.69 0.500368
Target:  5'- gGCCGC-CGCGCUGGgcgaccucgcGCC-CGGGCa-- -3'
miRNA:   3'- -CGGCGcGUGUGACC----------UGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 113547 0.71 0.393757
Target:  5'- gGCCguGCGCGCGCUGGACCgCGaGCa-- -3'
miRNA:   3'- -CGG--CGCGUGUGACCUGGaGCcCGcaa -5'
23646 3' -60.9 NC_005261.1 + 113306 0.68 0.529022
Target:  5'- uGCCGCGgGC-CUGGGCC-CGGcuGCGc- -3'
miRNA:   3'- -CGGCGCgUGuGACCUGGaGCC--CGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.