miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 112915 0.67 0.607882
Target:  5'- cGCUGCGUGCGCgaGGGCga-GGGCGg- -3'
miRNA:   3'- -CGGCGCGUGUGa-CCUGgagCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 110344 0.68 0.519399
Target:  5'- cGCUGCGCGCGCaccuGAUuuccaaCUCGGGCGa- -3'
miRNA:   3'- -CGGCGCGUGUGac--CUG------GAGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 108768 0.66 0.637915
Target:  5'- cGCCGCGC-CAC-GGcACCaUGGGCa-- -3'
miRNA:   3'- -CGGCGCGuGUGaCC-UGGaGCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 108596 0.68 0.537738
Target:  5'- gGCCuCGCcCACgGGcaccagcGCCUCGGGCGg- -3'
miRNA:   3'- -CGGcGCGuGUGaCC-------UGGAGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 108520 0.69 0.454233
Target:  5'- cGCCGCGCACGaagGGGUCUCGGuaGg- -3'
miRNA:   3'- -CGGCGCGUGUga-CCUGGAGCCcgCaa -5'
23646 3' -60.9 NC_005261.1 + 107652 0.7 0.436432
Target:  5'- cGCUGCGCGCGCaaacuccGcGGCCccgcCGGGCGUUg -3'
miRNA:   3'- -CGGCGCGUGUGa------C-CUGGa---GCCCGCAA- -5'
23646 3' -60.9 NC_005261.1 + 107255 0.67 0.617885
Target:  5'- cCCGCGgGCGCgcGGGCa-CGGGCGg- -3'
miRNA:   3'- cGGCGCgUGUGa-CCUGgaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 106958 0.68 0.558259
Target:  5'- cCCGgGCGCGCUccGCCUCGGcGCGc- -3'
miRNA:   3'- cGGCgCGUGUGAccUGGAGCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 106563 0.67 0.617885
Target:  5'- gGCCgGCGCGCGCcggccccgGGGCCgccgCGcGGCGc- -3'
miRNA:   3'- -CGG-CGCGUGUGa-------CCUGGa---GC-CCGCaa -5'
23646 3' -60.9 NC_005261.1 + 105752 0.66 0.667908
Target:  5'- cUCGCGCGCGg-GGACCU-GGGUGc- -3'
miRNA:   3'- cGGCGCGUGUgaCCUGGAgCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 105556 0.67 0.607882
Target:  5'- cGCaCGCGCGCagggccagguacGCguagaGGGCCUCgGGGCGc- -3'
miRNA:   3'- -CG-GCGCGUG------------UGa----CCUGGAG-CCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 105137 0.71 0.361625
Target:  5'- cGCCgGCGCGCGCaGGuCCUCGcGGCu-- -3'
miRNA:   3'- -CGG-CGCGUGUGaCCuGGAGC-CCGcaa -5'
23646 3' -60.9 NC_005261.1 + 104894 0.66 0.637915
Target:  5'- cGCCGCGUGCGCccGGAcgcCCUCcaGGGCc-- -3'
miRNA:   3'- -CGGCGCGUGUGa-CCU---GGAG--CCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 104838 0.72 0.316945
Target:  5'- gGCCGCGcCACGC-GGACCgcgCGGGUc-- -3'
miRNA:   3'- -CGGCGC-GUGUGaCCUGGa--GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 104178 0.73 0.276551
Target:  5'- cGCCGCGCGCg--GGuCgUCGGGCGg- -3'
miRNA:   3'- -CGGCGCGUGugaCCuGgAGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 103891 0.66 0.651929
Target:  5'- gGCgGCGCGCcaaGCcGGGCCacccgcgccgccaggUCGGGCGc- -3'
miRNA:   3'- -CGgCGCGUG---UGaCCUGG---------------AGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 102940 0.66 0.666911
Target:  5'- cGCCGcCGC-CGCUGcggcggcGGCCgCGGGCGc- -3'
miRNA:   3'- -CGGC-GCGuGUGAC-------CUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 102842 0.67 0.617885
Target:  5'- cGCCGCGcCACguGCUGGGCCagCaGcGCGUc -3'
miRNA:   3'- -CGGCGC-GUG--UGACCUGGa-GcC-CGCAa -5'
23646 3' -60.9 NC_005261.1 + 102495 0.7 0.41904
Target:  5'- cGCCGCGCcaGCGcCUGGGCCUUGcGCa-- -3'
miRNA:   3'- -CGGCGCG--UGU-GACCUGGAGCcCGcaa -5'
23646 3' -60.9 NC_005261.1 + 102463 0.66 0.627899
Target:  5'- cGgCGCGCAgGCgccGGACCUCcucGGCGc- -3'
miRNA:   3'- -CgGCGCGUgUGa--CCUGGAGc--CCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.