miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23646 3' -60.9 NC_005261.1 + 101895 0.68 0.519399
Target:  5'- aGCCGCGCGCGCUccuCCUCGaaagccGCGUg -3'
miRNA:   3'- -CGGCGCGUGUGAccuGGAGCc-----CGCAa -5'
23646 3' -60.9 NC_005261.1 + 101106 0.71 0.353114
Target:  5'- gGCCGCGCGCGCcuuggcgcccucgUGGuCCUCGcGCGa- -3'
miRNA:   3'- -CGGCGCGUGUG-------------ACCuGGAGCcCGCaa -5'
23646 3' -60.9 NC_005261.1 + 99866 0.66 0.686788
Target:  5'- cGCCGCGCGCcgccgccGCUcGGCgcgaGGGCGUUg -3'
miRNA:   3'- -CGGCGCGUG-------UGAcCUGgag-CCCGCAA- -5'
23646 3' -60.9 NC_005261.1 + 98052 0.75 0.213323
Target:  5'- gGCCGCGgGCgGCgGGACCgCGGGCGg- -3'
miRNA:   3'- -CGGCGCgUG-UGaCCUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 97897 0.66 0.647928
Target:  5'- gGCCgGCGgACcguCUGGGCgC-CGGGCGUc -3'
miRNA:   3'- -CGG-CGCgUGu--GACCUG-GaGCCCGCAa -5'
23646 3' -60.9 NC_005261.1 + 97405 0.68 0.529022
Target:  5'- uGCCGCgggcuuggcggGCGCGCcGGGCCUgcccuUGGGCGc- -3'
miRNA:   3'- -CGGCG-----------CGUGUGaCCUGGA-----GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 97077 0.66 0.666911
Target:  5'- uCCGCGUcggaggcGCcgGCUGGGCCggGGGCGc- -3'
miRNA:   3'- cGGCGCG-------UG--UGACCUGGagCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 97006 0.66 0.637915
Target:  5'- -gCGCGC-CAUUGGgcggGCCgUCGGGCGc- -3'
miRNA:   3'- cgGCGCGuGUGACC----UGG-AGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 96970 0.67 0.587935
Target:  5'- cGCCGgGCGCGauucacGcGGCCUCGGcGCGg- -3'
miRNA:   3'- -CGGCgCGUGUga----C-CUGGAGCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 96688 0.66 0.651929
Target:  5'- uGCCGCGCAggUACUGGcgACCcagcagcgaguuggCGGGCa-- -3'
miRNA:   3'- -CGGCGCGU--GUGACC--UGGa-------------GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 96342 0.66 0.666911
Target:  5'- gGCCGCGCGCaccugacgcccugACUGG-CCU-GGcGCGg- -3'
miRNA:   3'- -CGGCGCGUG-------------UGACCuGGAgCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 96306 0.66 0.666911
Target:  5'- gGCCGCGCGCaccugacgcccugACUGG-CCU-GGcGCGg- -3'
miRNA:   3'- -CGGCGCGUG-------------UGACCuGGAgCC-CGCaa -5'
23646 3' -60.9 NC_005261.1 + 94843 0.66 0.687778
Target:  5'- aCgGCGCGC-CUGG-CCUCGGcGCu-- -3'
miRNA:   3'- cGgCGCGUGuGACCuGGAGCC-CGcaa -5'
23646 3' -60.9 NC_005261.1 + 93654 0.68 0.558259
Target:  5'- uCCGCGUACGCccaccGGuCCgCGGGCGg- -3'
miRNA:   3'- cGGCGCGUGUGa----CCuGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 92966 0.73 0.282987
Target:  5'- gGCUGCGCACGCgguuGGCUUCGGGgGg- -3'
miRNA:   3'- -CGGCGCGUGUGac--CUGGAGCCCgCaa -5'
23646 3' -60.9 NC_005261.1 + 92759 0.66 0.677861
Target:  5'- cCCGCGC-CGCUcGGACCgggccgagccCGGGCu-- -3'
miRNA:   3'- cGGCGCGuGUGA-CCUGGa---------GCCCGcaa -5'
23646 3' -60.9 NC_005261.1 + 92608 0.69 0.490968
Target:  5'- cGCgGCGCGUGCcgGGGCCcCGGGCGc- -3'
miRNA:   3'- -CGgCGCGUGUGa-CCUGGaGCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 90874 0.67 0.56811
Target:  5'- cGCCGUcuGCGCGCUGGGCgaCGGcauggcGCGg- -3'
miRNA:   3'- -CGGCG--CGUGUGACCUGgaGCC------CGCaa -5'
23646 3' -60.9 NC_005261.1 + 89176 0.67 0.587935
Target:  5'- aCCGCGgACAacCUGGAgCCgcucgCGGGCGc- -3'
miRNA:   3'- cGGCGCgUGU--GACCU-GGa----GCCCGCaa -5'
23646 3' -60.9 NC_005261.1 + 88272 0.68 0.558259
Target:  5'- cGCCGCGCuGC-CUGGACgaCGacGGCGg- -3'
miRNA:   3'- -CGGCGCG-UGuGACCUGgaGC--CCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.